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  • 45abc0ae14 use model intern calculation for the characterizing values AlexanderOtt 2020-03-27 10:28:12 +01:00
  • f41b6bdb78 add check so that time constants cannot be negative AlexanderOtt 2020-03-27 10:26:08 +01:00
  • c841bed77e improve search for v-offset AlexanderOtt 2020-03-27 10:22:56 +01:00
  • cef2f7a016 correct name of tester class, remove unrealistig test AlexanderOtt 2020-03-25 11:10:42 +01:00
  • dacde1f1b6 add tests for sinusoidalStep, add FiCurve plot possibilities (temp), add initial simplex generation a.ott 2020-03-16 17:17:05 +01:00
  • 6012927416 tests, correct stimulus-type for fi-curve, general changes a.ott 2020-03-11 18:03:21 +01:00
  • 15166042be remove unneeded test ploting a.ott 2020-03-09 09:56:57 +01:00
  • 98c0c1ed1d add test to hand fit model parameters and test for FiCurve a.ott 2020-03-04 15:57:32 +01:00
  • de6c9f0b4d adapt to new way to calculate freq traces (different start points) a.ott 2020-03-04 15:56:34 +01:00
  • 74c9fa55fa make all_mean_freq_trace more robust a.ott 2020-03-04 15:55:24 +01:00
  • a71193f0c9 change model step size to appropriate size a.ott 2020-03-04 15:51:28 +01:00
  • 021028c0ba remove unneeded test plotting a.ott 2020-03-04 15:50:31 +01:00
  • 63729529c3 remove fulfilled todo a.ott 2020-03-04 15:49:05 +01:00
  • 3fa951624b add error messages a.ott 2020-03-03 15:12:24 +01:00
  • 861557da0d unittests and debug for sinusoidal stimulus a.ott 2020-03-03 14:27:04 +01:00
  • 04815de85c add actual input scaling a.ott 2020-03-03 09:24:10 +01:00
  • 7e65ebae4e change implementation to more efficient way. adapt signature a.ott 2020-03-02 16:37:37 +01:00
  • 8997e56618 debug and add unittests 2 a.ott 2020-03-02 16:31:45 +01:00
  • 170ecab8f4 debug and add unittests 1 a.ott 2020-02-27 09:28:34 +01:00
  • 234f58404e adapt runtime test to changes a.ott 2020-02-18 16:31:08 +01:00
  • af2172c81b improve internal stimulus handling a.ott 2020-02-18 16:30:32 +01:00
  • 251ca4f2ef rectify stimulus in simulate fast, add marker calculation a.ott 2020-02-18 16:29:09 +01:00
  • 04ba55bbc5 add convert to array with jit a.ott 2020-02-17 16:51:10 +01:00
  • a53d6f4a4e too much sorry future me -.- a.ott 2020-02-14 14:33:58 +01:00
  • ef3c88d744 add to array function, add step functionality a.ott 2020-02-14 14:33:21 +01:00
  • 8645d30147 change variable order to fit other lines a.ott 2020-02-14 14:32:21 +01:00
  • 694cb85770 add warning for baseline spikestimes a.ott 2020-02-14 14:31:10 +01:00
  • d0d42406c8 add getters for vs and sc a.ott 2020-02-14 14:30:37 +01:00
  • 9ccf46f3c3 add functionality to parse baseline spiketimes a.ott 2020-01-29 11:38:44 +01:00
  • 5712b1bb84 adapt to moved rectify and fix v_offset bug a.ott 2020-01-29 11:16:02 +01:00
  • e0c1ab31a3 sort default parameters more intuitively a.ott 2020-01-29 11:05:12 +01:00
  • d7f70ab48d change reference to old_helper_functions a.ott 2020-01-29 11:04:18 +01:00
  • e7553b24cd change order of clipped line to fit normal line, add rectify a.ott 2020-01-29 11:03:13 +01:00
  • f6b2ea8938 write small example case for scipy.optimize.minimize a.ott 2020-01-29 11:00:04 +01:00
  • 0adb8e98b9 clean up helper functions a.ott 2020-01-29 10:59:27 +01:00
  • 3ffa6d5dbe have amplitude be a optional value with default one a.ott 2020-01-27 14:13:19 +01:00
  • 5165046f20 delete out of date code a.ott 2020-01-27 13:43:42 +01:00
  • 45d47b3818 second part of move introductory models... a.ott 2020-01-27 13:42:44 +01:00
  • 0deb9bb19c change default values to dict instead of two lists a.ott 2020-01-27 13:39:55 +01:00
  • 3ecc201553 move old introductory models a.ott 2020-01-27 13:39:05 +01:00
  • 867c4461d8 add test for step size dependence of lifac noise a.ott 2020-01-24 13:39:46 +01:00
  • 6fcdf1eee0 sinusoidal stimulus with beat a.ott 2020-01-24 13:39:12 +01:00
  • 15bb88776e add noise, input scaling and offset voltage to lifac a.ott 2020-01-24 13:38:36 +01:00
  • 596dee8779 cleanup a.ott 2020-01-24 13:36:59 +01:00
  • 2256800e33 add rectify, cv, serial correlation a.ott 2020-01-24 13:36:12 +01:00
  • 357c09d3dd remove parameter functions -> move to abstract class a.ott 2020-01-24 13:35:11 +01:00
  • d274f19f3c general changes in search for relation a.ott 2020-01-20 16:22:08 +01:00
  • 6cd4e13da4 add factor to adaption step to make it independent of tau_a a.ott 2020-01-20 16:21:37 +01:00
  • 4928fedc4e change base function to line a.ott 2020-01-20 16:20:40 +01:00
  • 61605cbb9e add way to test other parameters a.ott 2020-01-17 17:29:38 +01:00
  • 29fdee009e prepare for testing of other variables AlexanderOtt 2020-01-15 21:33:07 +01:00
  • 3eda710394 extend interface + implement scrappy model parser(to be reworked) a.ott 2020-01-15 14:41:24 +01:00
  • 3921a55761 add interface about available info of model (V, spiketimes, frequency), move parameter functions to abstractmodel a.ott 2020-01-15 14:39:26 +01:00
  • 5d137ae88e add todo a.ott 2020-01-15 14:37:12 +01:00
  • 5ab5ab86e6 extend stimuli interface for start, duration, end metadata a.ott 2020-01-15 14:36:35 +01:00
  • 5382ed2d4f add line function and its inverse a.ott 2020-01-15 14:34:38 +01:00
  • 268bedb2f9 implement scrappy version to find relation of adaption variables a.ott 2020-01-15 14:33:47 +01:00
  • 6e1b9d325b add test for firerate model, move step size test a.ott 2020-01-15 14:32:30 +01:00
  • 61ddd9159e implement Fireratemodel based on boltzmann a.ott 2020-01-15 14:30:50 +01:00
  • 2b4380835e started the creation of a model interface and a dataparser for models a.ott 2019-12-20 14:43:02 +01:00
  • c7bcefedbe simplify interface a.ott 2019-12-20 14:26:17 +01:00
  • 3f91162055 Merge branch 'master' of https://github.com/Nyxas/neuronModel a.ott 2019-12-20 13:37:22 +01:00
  • f5dc213e42 commit all existing code a.ott 2019-12-20 13:33:34 +01:00
  • e7ce44273e inital commit a.ott 2019-12-20 13:32:36 +01:00
  • 5609458329 Initial commit Nyxas 2019-12-20 13:23:17 +01:00