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b9f15827dd
add behaviour distributions beginning of sensitivity analysis
2020-07-17 13:36:06 +02:00
600cd41dd2
add file to collect all gloabl figure constants
2020-07-16 13:31:14 +02:00
6ea3eadb88
seconds part of analysis script as it is renamed collect results script
2020-07-16 13:30:40 +02:00
c1228b1cba
script for analysis includes/absorbed fit statistics code
2020-07-16 13:29:49 +02:00
a7fe56be66
add limits >0 for ref_period and noise_strength
2020-07-16 13:28:28 +02:00
c7e2bd9085
change test
2020-07-14 17:29:08 +02:00
5bdc15210e
add functions for single and double gauss curves
2020-07-14 17:28:53 +02:00
a9fe4b4149
add (bad) method model part
2020-07-14 17:28:25 +02:00
59db947745
increase fitting interations
2020-07-14 17:27:40 +02:00
b525539ec4
add title for an debug plot
2020-07-14 17:27:13 +02:00
a334d45ec1
change calculation of burstiness
2020-07-14 17:26:42 +02:00
d29e6cded2
add figures for stimuli
2020-07-14 17:26:13 +02:00
c64add286f
add scripts to create plots and read info from data
2020-07-14 17:25:42 +02:00
378ead984d
add more papers to read
2020-07-14 17:24:40 +02:00
7de1e31134
include latex compilation files
2020-07-09 14:03:14 +02:00
3b04f618e8
update data path
2020-07-09 14:02:30 +02:00
7963058040
increase weights for baseline parameters
2020-07-09 14:01:21 +02:00
a176bede4c
update
2020-07-09 14:00:57 +02:00
7f8391ba4f
plot burstiness
2020-07-09 14:00:23 +02:00
bf8634a247
add sorting for vector strength and burstiness
2020-07-09 13:59:46 +02:00
fc9065e31a
update sources ?
2020-07-09 13:56:04 +02:00
6f09627103
update sources
2020-07-09 13:54:26 +02:00
5941db40cc
add example method structure
2020-07-07 11:45:25 +02:00
6313de9728
increase trials for the results that are saved, a lot
2020-07-07 11:35:20 +02:00
8d81aea9fe
increase trials for FiCurve in error calc
2020-07-07 11:30:13 +02:00
3faabb353b
make eod calculation more lightweight, save/load results to a file
2020-07-07 11:29:35 +02:00
dbd28a7bd3
remove print out
2020-07-07 11:28:10 +02:00
ad62b31abc
improve eod calculation/detection
2020-07-06 15:22:53 +02:00
71115d83d0
add set a_zero to a baseline value before simulation
2020-07-06 14:12:11 +02:00
a52dc65626
new notes from henriettes thesis
2020-07-06 11:53:30 +02:00
3880e32fdc
new script to read and analyse the generated fits
2020-07-06 11:52:38 +02:00
f3aa721745
formating
2020-07-06 11:52:05 +02:00
16621fb78c
test modelFit
2020-07-05 11:06:42 +02:00
222af65bd6
save more data after Fit
2020-07-05 11:06:05 +02:00
574f4a80f2
add loading of fi-curve values, add creation of masterplot
2020-07-05 11:04:32 +02:00
89ebeb7fd0
add ability to fit contrast flipped cells, change error for frequency lists
2020-07-05 11:03:28 +02:00
405424b6eb
add get cell name func
2020-07-05 11:02:22 +02:00
6746208a73
add function to sort for species
2020-07-04 12:03:13 +02:00
c517eaa044
remove duplicate pattern
2020-07-04 11:29:38 +02:00
ce03ab68c5
one with everything
2020-07-04 11:28:33 +02:00
189293ff0e
improve ram usage in fitting and fix in sam
2020-06-14 15:49:10 +02:00
7f0c89b65f
Merge branch 'master' of https://github.com/Nyxas/neuronModel
2020-06-14 13:47:37 +02:00
3769451f53
fix calculation of burstiness
2020-06-14 13:44:06 +02:00
e1609c7ea8
make ranges coarser for speed
2020-06-04 17:17:44 +02:00
1962067cd8
make warning more telling exact
2020-06-04 17:13:55 +02:00
c5d580512e
tried to make parrallel fitting not need more and more ram
2020-06-04 17:13:09 +02:00
7077c5b8e6
add prototype to plot sam pdf comparisions cell-model
2020-06-04 17:12:15 +02:00
13c807f921
remove typo
2020-06-01 12:23:53 +02:00
e75c262532
add function to test the effect of eod frequency and refractory period
2020-06-01 12:20:18 +02:00
c6e07207f3
add and change functions to run parrelal fitting of cells with const refractory period
2020-06-01 12:19:31 +02:00
5a58483edb
add routine for fitting with const refractory period
2020-06-01 12:18:42 +02:00
859faae812
add test for bustiness
2020-06-01 12:17:25 +02:00
8fc99a356d
add option for test plot in get_bustiness
2020-06-01 12:17:04 +02:00
a2da22cd76
run all cells
2020-05-27 13:39:28 +02:00
2a55078894
add refratory period to fitting, add burstiness error
2020-05-27 13:36:14 +02:00
44c9024f1f
add and deleted some files
2020-05-27 09:14:38 +02:00
5ce24e182d
add file to run Fitter add parallelization
2020-05-27 09:14:19 +02:00
db27e7c980
plot cell reaction to SAM stimulus
2020-05-27 09:13:39 +02:00
4b4e5c6d14
add refractory time
2020-05-27 09:12:28 +02:00
539d8605bd
add functions to read SAM behaviour of data cells
2020-05-27 09:11:57 +02:00
55516b64d2
add file to play with SAM behaviour
2020-05-27 09:11:23 +02:00
b1c5a6b0a4
adapt tests to new model behaviour
2020-05-27 09:10:31 +02:00
9c434117fa
add way to test routines / add routines
2020-05-27 09:08:02 +02:00
043303228e
add simple hand tests
2020-05-27 09:07:10 +02:00
cc526251a5
add test_routines folder
2020-05-26 18:13:14 +02:00
0b26c7e81e
use ref to data for tests
2020-05-20 16:21:01 +02:00
4388983ae2
tests and automatic renaming
2020-05-20 15:24:25 +02:00
15bcc09655
add reference and test for detect spikes
2020-05-20 15:23:45 +02:00
f7ffdcc66f
change detect spikes approach
2020-05-20 15:22:55 +02:00
e84ac53657
change a_delta to start_parameter
2020-05-20 15:22:13 +02:00
92119373c1
add second set of parameters add additional variable to check
2020-05-20 15:21:30 +02:00
e92197d0ba
renaming of functions
2020-05-20 15:20:22 +02:00
869923a2be
add plot_polar for vector strength
2020-05-20 15:19:38 +02:00
676a0e4945
adapt for new FiCurve class
2020-05-20 15:17:42 +02:00
256931845e
add new getters and plot_mean_freq curves
2020-05-20 15:17:23 +02:00
d086f4b3a1
add plotting and saving of f point detection
2020-05-18 12:19:11 +02:00
a41de94961
add plotting function for f point detections (model)
2020-05-18 12:18:47 +02:00
49abc78983
change sc error
2020-05-18 12:17:34 +02:00
ba464b3f5e
bug fix mean_freq plus time trace, add function to find time window for f point detections
2020-05-18 12:16:56 +02:00
0dfff5768c
improve f_zero slope error, increase trials for fi_curve_model
2020-05-18 09:46:06 +02:00
2f0c19ea5a
lots of changes - errors in f_zero calculation?
2020-05-13 16:45:12 +02:00
1f82f06209
separate FIcurve class, change fitter results structure
2020-05-12 14:14:55 +02:00
c1db288f97
save graphs during fitting process
2020-05-11 15:28:03 +02:00
11c37c9f2a
seperate baseline attribute calculation
2020-05-11 13:56:56 +02:00
9485492f4d
cv clean up
2020-05-11 11:35:20 +02:00
b37db0ea36
add coefficient of variation calculation + in fitter
2020-05-11 10:21:17 +02:00
2d04311790
commit all..
2020-05-10 13:55:48 +02:00
0855596623
to test remotely
2020-04-16 15:48:42 +02:00
f9d4838b71
add new fit routine which includes dend_tau
2020-04-14 11:38:44 +02:00
4d8e1be4d9
update to standard units
2020-04-14 11:38:07 +02:00
b7da40ffd3
add dendritic low pass filter
2020-04-11 13:56:16 +02:00
7fda8d65f1
remove fulfilled todo
2020-04-03 16:47:24 +02:00
7739dcf401
rewrite fit_lifacnoise in new file, save results, add results to .gitignore
2020-04-02 10:11:15 +02:00
f9ed1fc30c
add simple way to compare model and a data set
2020-04-02 10:10:19 +02:00
d2e83e8bc2
move detection (f_zero,...) and fitting to helperfunctions
2020-04-02 10:09:10 +02:00
af40a60189
use same type of calculations for characteristics as in the data
2020-04-02 10:07:17 +02:00
b4d5cc2714
remove unnecessary print
2020-04-02 10:05:57 +02:00
6562e2cff8
add fit_(function)(x,y) type functions
2020-04-02 10:05:22 +02:00
6ae9781cec
allow non int indexes as simulation time may not be a multiple of the sampling time (TODO fix the simulation time?)
2020-04-02 10:03:48 +02:00
42ee462016
add condition that time constants (taus) are larger than 0
2020-04-02 10:00:53 +02:00
a.ott
AlexanderOtt