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seconds part of analysis script as it is renamed collect results script

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a.ott 2020-07-16 13:30:40 +02:00
parent c1228b1cba
commit 6ea3eadb88
1 changed files with 0 additions and 42 deletions
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collect_results.py
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import argparse
import os
import numpy as np
from ModelFit import ModelFit
if __name__ == '__main__':
# parser = argparse.ArgumentParser()
# parser.add_argument("dir", help="folder containing the cell folders with the fit results")
# args = parser.parse_args()
dir_path = "results/invivo_results/" # args.dir
# if not os.path.isdir(dir_path):
# print("Argument dir is not a directory.")
# parser.print_usage()
# exit(0)
for item in os.listdir(dir_path):
cell_folder = os.path.join(dir_path, item)
if not os.path.isdir(cell_folder):
continue
min_err = np.inf
min_run = ""
for run in os.listdir(cell_folder):
err = float(run.split("_")[-1])
if err < min_err:
min_err = err
min_run = os.path.join(cell_folder, run)
results = ModelFit(min_run)
quit()
# search folders for one with min error
# gather images + info about parameters, behaviour
pass