a.ott
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2f0c19ea5a
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lots of changes - errors in f_zero calculation?
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2020-05-13 16:45:12 +02:00 |
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a.ott
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1f82f06209
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separate FIcurve class, change fitter results structure
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2020-05-12 14:14:55 +02:00 |
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a.ott
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c1db288f97
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save graphs during fitting process
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2020-05-11 15:28:03 +02:00 |
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a.ott
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11c37c9f2a
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seperate baseline attribute calculation
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2020-05-11 13:56:56 +02:00 |
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a.ott
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9485492f4d
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cv clean up
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2020-05-11 11:35:20 +02:00 |
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a.ott
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b37db0ea36
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add coefficient of variation calculation + in fitter
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2020-05-11 10:21:17 +02:00 |
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alexanderott
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2d04311790
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commit all..
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2020-05-10 13:55:48 +02:00 |
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alexanderott
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0855596623
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to test remotely
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2020-04-16 15:48:42 +02:00 |
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A. Ott
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f9d4838b71
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add new fit routine which includes dend_tau
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2020-04-14 11:38:44 +02:00 |
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A. Ott
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4d8e1be4d9
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update to standard units
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2020-04-14 11:38:07 +02:00 |
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A. Ott
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b7da40ffd3
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add dendritic low pass filter
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2020-04-11 13:56:16 +02:00 |
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AlexanderOtt
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7fda8d65f1
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remove fulfilled todo
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2020-04-03 16:47:24 +02:00 |
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AlexanderOtt
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7739dcf401
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rewrite fit_lifacnoise in new file, save results, add results to .gitignore
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2020-04-02 10:11:15 +02:00 |
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AlexanderOtt
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f9ed1fc30c
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add simple way to compare model and a data set
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2020-04-02 10:10:19 +02:00 |
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AlexanderOtt
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d2e83e8bc2
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move detection (f_zero,...) and fitting to helperfunctions
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2020-04-02 10:09:10 +02:00 |
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AlexanderOtt
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af40a60189
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use same type of calculations for characteristics as in the data
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2020-04-02 10:07:17 +02:00 |
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AlexanderOtt
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b4d5cc2714
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remove unnecessary print
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2020-04-02 10:05:57 +02:00 |
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AlexanderOtt
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6562e2cff8
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add fit_(function)(x,y) type functions
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2020-04-02 10:05:22 +02:00 |
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AlexanderOtt
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6ae9781cec
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allow non int indexes as simulation time may not be a multiple of the sampling time (TODO fix the simulation time?)
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2020-04-02 10:03:48 +02:00 |
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AlexanderOtt
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42ee462016
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add condition that time constants (taus) are larger than 0
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2020-04-02 10:00:53 +02:00 |
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AlexanderOtt
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45abc0ae14
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use model intern calculation for the characterizing values
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2020-03-27 10:28:12 +01:00 |
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AlexanderOtt
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f41b6bdb78
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add check so that time constants cannot be negative
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2020-03-27 10:26:08 +01:00 |
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AlexanderOtt
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c841bed77e
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improve search for v-offset
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2020-03-27 10:22:56 +01:00 |
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AlexanderOtt
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cef2f7a016
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correct name of tester class, remove unrealistig test
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2020-03-25 11:10:42 +01:00 |
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a.ott
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dacde1f1b6
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add tests for sinusoidalStep, add FiCurve plot possibilities (temp), add initial simplex generation
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2020-03-16 17:17:05 +01:00 |
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a.ott
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6012927416
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tests, correct stimulus-type for fi-curve, general changes
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2020-03-11 18:03:21 +01:00 |
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a.ott
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15166042be
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remove unneeded test ploting
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2020-03-09 09:56:57 +01:00 |
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a.ott
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98c0c1ed1d
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add test to hand fit model parameters and test for FiCurve
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2020-03-04 15:57:32 +01:00 |
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a.ott
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de6c9f0b4d
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adapt to new way to calculate freq traces (different start points)
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2020-03-04 15:56:34 +01:00 |
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a.ott
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74c9fa55fa
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make all_mean_freq_trace more robust
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2020-03-04 15:55:24 +01:00 |
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a.ott
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a71193f0c9
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change model step size to appropriate size
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2020-03-04 15:51:28 +01:00 |
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a.ott
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021028c0ba
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remove unneeded test plotting
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2020-03-04 15:50:31 +01:00 |
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a.ott
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63729529c3
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remove fulfilled todo
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2020-03-04 15:49:05 +01:00 |
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a.ott
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3fa951624b
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add error messages
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2020-03-03 15:12:24 +01:00 |
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a.ott
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861557da0d
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unittests and debug for sinusoidal stimulus
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2020-03-03 14:27:04 +01:00 |
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a.ott
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04815de85c
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add actual input scaling
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2020-03-03 09:24:10 +01:00 |
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a.ott
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7e65ebae4e
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change implementation to more efficient way. adapt signature
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2020-03-02 16:37:37 +01:00 |
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a.ott
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8997e56618
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debug and add unittests 2
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2020-03-02 16:31:45 +01:00 |
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a.ott
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170ecab8f4
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debug and add unittests 1
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2020-02-27 09:28:34 +01:00 |
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a.ott
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234f58404e
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adapt runtime test to changes
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2020-02-18 16:31:08 +01:00 |
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a.ott
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af2172c81b
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improve internal stimulus handling
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2020-02-18 16:30:32 +01:00 |
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a.ott
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251ca4f2ef
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rectify stimulus in simulate fast, add marker calculation
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2020-02-18 16:29:09 +01:00 |
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a.ott
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04ba55bbc5
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add convert to array with jit
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2020-02-17 16:51:10 +01:00 |
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a.ott
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a53d6f4a4e
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too much sorry future me -.-
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2020-02-14 14:33:58 +01:00 |
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a.ott
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ef3c88d744
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add to array function, add step functionality
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2020-02-14 14:33:21 +01:00 |
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a.ott
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8645d30147
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change variable order to fit other lines
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2020-02-14 14:32:21 +01:00 |
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a.ott
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694cb85770
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add warning for baseline spikestimes
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2020-02-14 14:31:10 +01:00 |
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a.ott
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d0d42406c8
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add getters for vs and sc
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2020-02-14 14:30:37 +01:00 |
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a.ott
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9ccf46f3c3
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add functionality to parse baseline spiketimes
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2020-01-29 11:38:44 +01:00 |
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a.ott
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5712b1bb84
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adapt to moved rectify and fix v_offset bug
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2020-01-29 11:16:02 +01:00 |
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