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d18e7e9303
[util] remove debug output
Jan Grewe
2020-08-18 11:32:54 +0200
6ab71b2fe9
[relacs] add __str__ and __repr__ methods to classes
Jan Grewe
2020-08-18 11:32:15 +0200
8b93d92f4d
Merge pull request 'more fixes for old datasets' (#5 ) from relacs into master
csachgau
2020-08-14 17:26:50 +0200
6e2bfde2dc
[database] fix repro run counter ...
Jan Grewe
2020-08-14 17:19:02 +0200
34f0044749
[backend/util] fixing time conversions
Jan Grewe
2020-08-14 17:17:13 +0200
e95dd763a4
Merge pull request 'several fixes and improvements for handling old relacs files' (#4 ) from relacs into master
csachgau
2020-08-14 17:04:41 +0200
0da2bfa110
[frontend util] fix trial duration estimation
Jan Grewe
2020-08-14 13:39:07 +0200
94221463f2
[backend/util] fix parsing old stimfiles ...
Jan Grewe
2020-08-14 13:34:07 +0200
3d70e31512
[relacs] ignore trials with less than 5 spikes ...
Jan Grewe
2020-08-13 15:54:46 +0200
0881947fd2
[util] Stimspikes stored trial duration and data
Jan Grewe
2020-08-13 15:53:56 +0200
8844825c21
[frontend] dataset by id works form parts of id
Jan Grewe
2020-08-13 15:53:08 +0200
1cf7530b48
[backend] reconstruct repro run, if not in stimuli.dat
Jan Grewe
2020-08-13 15:52:19 +0200
e37d4d5add
[frontend] add __repr__ and to dict methods
Jan Grewe
2020-08-12 18:24:58 +0200
48acf9edb3
[FileStimData] add settings to classmembers
Jan Grewe
2020-08-12 18:24:34 +0200
31bb53fe31
[Dataset] add construtor arg to pull up from dataset_id
Jan Grewe
2020-08-12 13:44:56 +0200
7457340dfe
[relacs/BaselineData] add baseline rate
Jan Grewe
2020-08-12 13:43:59 +0200
29f971b892
[fixes] in docu and frontend
Jan Grewe
2020-08-10 17:03:07 +0200
6e26991a85
Merge branch 'master' of https://whale.am28.uni-tuebingen.de/git/jgrewe/fishBook
Jan Grewe
2020-08-10 13:07:21 +0200
d4db46bedf
[server] and background stuff
Jan Grewe
2020-08-10 13:06:55 +0200
24ccadca1d
[mkdocs] simplify nav
Jan Grewe
2020-08-08 13:35:08 +0200
72fe7e2df8
[setup] improvements
Jan Grewe
2020-08-08 13:05:18 +0200
b48b2b1a92
tiny fixes
Jan Grewe
2020-08-08 12:42:02 +0200
589286fad1
[server] add server stub and command line clients
Jan Grewe
2020-08-07 18:48:47 +0200
3a09e301c0
[dataserver/cmd] add first steps towards a data server
Jan Grewe
2020-08-07 11:17:52 +0200
38b73303c0
[frontend] FileStimulus is working for relacsed and nixed files
Jan Grewe
2020-08-06 19:41:05 +0200
07b60c6622
[frontend] import filestim data from nix rund, add serveral methods
Jan Grewe
2020-08-05 19:19:24 +0200
32f4f23527
[docs] more more more
Jan Grewe
2020-08-04 14:35:28 +0200
472f771cb5
[docs] database layout.md
Jan Grewe
2020-08-03 18:31:27 +0200
5a4644344a
Merge branch 'master' of https://whale.am28.uni-tuebingen.de/git/jgrewe/fishBook
Jan Grewe
2020-08-03 18:26:50 +0200
ec88c79e0f
[frontend] support date restrictions in dataset, expose data_host to user
Jan Grewe
2020-08-03 18:26:07 +0200
b376edb342
[docs] more docs and getting started
Jan Grewe
2020-08-03 18:25:47 +0200
333db5c8f9
[relacs] adaptations of find methods
Jan Grewe
2020-08-03 18:21:36 +0200
56b2622383
[docs] add ER schema
Jan Grewe
2020-08-03 18:20:12 +0200
05da4e0a89
[cmd] add project initialize script
Jan Grewe
2020-07-31 23:16:27 +0200
9d61ca7a1c
[backend] a few improvements, user feedback during import
Jan Grewe
2020-07-31 18:05:24 +0200
b43aabba6f
[frontend] a lot of docstrings
Jan Grewe
2020-07-31 18:04:40 +0200
24350c18ac
[cmd] profiling
Jan Grewe
2020-07-31 18:03:09 +0200
dd8bff586d
[util] split mtag feature to yaml routine
Jan Grewe
2020-07-31 18:02:31 +0200
67c0b06052
[docs] info on db server configurations
Jan Grewe
2020-07-31 18:01:59 +0200
fcb4a48500
[setup.py] inbetween state
Jan Grewe
2020-07-31 18:01:05 +0200
548dca769e
[cmd] add a data import command
Jan Grewe
2020-07-31 17:59:50 +0200
e8a37a326c
some edits
Jan Grewe
2020-07-29 11:51:44 +0200
d968fdac8c
[frontend] add test flag to find methods
Jan Grewe
2020-07-28 15:33:01 +0200
1832bae72c
backend better output
Jan Grewe
2020-07-28 15:31:36 +0200
f4d669f1d6
[dataimport] minor optimizations
Jan Grewe
2020-07-28 15:30:37 +0200
4326148b3f
fix output
Jan Grewe
2020-07-28 14:29:57 +0200
b01270bb9b
data import command line tool
Jan Grewe
2020-07-28 14:29:40 +0200
fce7f67fa2
[frontend] improve finding, docstrings
Jan Grewe
2020-07-28 13:36:10 +0200
76107b3074
[backend/database] fix imports, remove single quotes from settings
Jan Grewe
2020-07-28 13:34:59 +0200
885d952e43
[gitignore] add vscode, generated docu folder
Jan Grewe
2020-07-28 13:34:05 +0200
fec628034c
[backend/util] progress bar, some docstrings
Jan Grewe
2020-07-28 13:33:29 +0200
5ba629c1ae
[frontend] dataset docstrings, improved searching
Jan Grewe
2020-07-28 13:32:17 +0200
0fcddd3d51
[docs] adds a stolen shell script for creating the documentation ...
Jan Grewe
2020-07-27 11:11:40 +0200
b4d03325de
docstrings and added Dataset totalcount function
Jan Grewe
2020-07-27 09:50:33 +0200
59e6d4c0da
some docu work
Jan Grewe
2020-07-27 09:50:07 +0200
ab10f715d4
add mkdocs config
Jan Grewe
2020-07-27 09:49:24 +0200
914a861b26
restructuring
Jan Grewe
2020-07-22 22:43:11 +0200
14bed0cc6a
rearraning things
Jan Grewe
2020-07-22 13:35:12 +0200
1874985f56
moving stuff around
Jan Grewe
2020-07-22 13:09:32 +0200
8af1591f33
more docs, move fixmes
Jan Grewe
2020-07-22 11:01:29 +0200
eaaf8a71b5
more changes and stubs for docu
Jan Grewe
2020-07-22 10:44:02 +0200
c1d0a27c67
stub for getting started
Jan Grewe
2020-07-22 10:31:54 +0200
ee399b1f3f
some docu changes
Jan Grewe
2020-07-22 10:30:18 +0200
a6a478c5d1
docstrings, renaming etc
Jan Grewe
2020-07-22 10:18:20 +0200
b86c1b2653
fixes and docstring stubs
Jan Grewe
2020-07-22 10:17:46 +0200
537162be00
tiny changes
Jan Grewe
2020-07-22 10:16:52 +0200
5db8c01ed7
[__init__] better package imports
Jan Grewe
2020-07-22 10:15:35 +0200
2efdc5eca4
fix install requirements for versions > 3.7
Jan Grewe
2020-07-22 10:15:09 +0200
e0cd2a0538
[reproclasses] new FileStimulusData class
Jan Grewe
2019-11-18 16:52:01 +0100
9136b4b042
[readme] issues
Jan Grewe
2019-11-18 16:51:14 +0100
1a1dabf955
[reproclasses/baseline] add function to get the raw membrane voltage
Jan Grewe
2019-10-18 16:39:07 +0200
ade9b62c54
Merge branch 'master' of https://whale.am28.uni-tuebingen.de/git/jgrewe/fishBook
Jan Grewe
2019-10-09 11:43:55 +0200
3db309b6f1
[fishbook/dataset] fix constructor when passing the dataset_id
Jan Grewe
2019-10-09 11:42:07 +0200
b009cf673a
[reproclasses/FICurve] add documentation
Jan Grewe
2019-10-09 11:41:04 +0200
2c4f3afa56
[reproclasses/FICurve] buffer spike times when reading from nix ...
Jan Grewe
2019-10-09 11:38:58 +0200
fe2457d85f
[reproclasses/FICurve] fixed time alignment of spikes, create time arrays
Jan Grewe
2019-10-09 11:38:05 +0200
ecdd29da79
[reproclasses, FIData] reading data from old-style files works
Jan Grewe
2019-10-09 10:01:59 +0200
a77feab830
datetime patch
Carolin Sachgau
2019-10-08 11:47:01 +0200
9b38188812
[reproclasses] docstrings
Jan Grewe
2019-10-07 17:21:27 +0200
25c296be6f
[FiData] add method to fit fi curves
Jan Grewe
2019-10-07 15:00:18 +0200
7ab965fe37
[reproclasses] new Boltzmann fit class
Jan Grewe
2019-10-07 14:55:13 +0200
8d253c9c7a
[reproclasses] new FI-Curve class, reading from nix works
Jan Grewe
2019-10-02 18:10:47 +0200
c03f84c2ee
[fishbook] additional functions for Stimulus class
Jan Grewe
2019-10-02 18:10:01 +0200
d21c75cc7f
[fishbook] add _tuple property that returns a copy of the db tuple
Jan Grewe
2019-10-02 18:09:37 +0200
77c0460ca9
[Cell] return all datasets pointing to itself
Jan Grewe
2019-10-01 16:58:54 +0200
0f46fa1431
[BaselineData] fix return value of circstd
Jan Grewe
2019-10-01 08:39:07 +0200
00086a4545
Merge branch 'master' of https://whale.am28.uni-tuebingen.de/git/jgrewe/fishBook
Jan Grewe
2019-09-24 21:49:41 +0200
2d2f22ef92
note to README
Jan Grewe
2019-09-24 21:49:38 +0200
4f2a114c9e
many new function on BaselineData class
Jan Grewe
2019-09-24 21:44:49 +0200
0160c583d7
Merge branch 'master' of https://whale.am28.uni-tuebingen.de/git/jgrewe/fishBook
Jan Grewe
2019-09-21 11:18:33 +0200
1ee41f6632
readme
Jan Grewe
2019-09-21 11:17:36 +0200
98c23554ce
lots of changes
Jan Grewe
2019-09-21 11:15:41 +0200
0453253bf3
add quality to find_repros
Jan Grewe
2019-09-19 11:08:12 +0200
34d71d537e
obscuring credentials and more docu
Jan Grewe
2019-09-19 10:37:33 +0200
d27c02614c
repro can find by celltype, species and name correctly
Jan Grewe
2019-09-19 10:12:51 +0200
4b282de987
more docu
Jan Grewe
2019-09-18 22:59:38 +0200
136b0dae96
add docs stub
Jan Grewe
2019-09-18 22:46:38 +0200
d918373564
baseline data should now work with frontend classes
Jan Grewe
2019-09-18 18:14:06 +0200
c4bc3e064a
fix off-by-one error in progress message
Jan Grewe
2019-09-18 18:13:25 +0200
d542641f7d
improve feedback upon unknown or ambiguous ids
Jan Grewe
2019-09-18 18:06:34 +0200
Jan Grewe
csachgau