a.ott
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574f4a80f2
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add loading of fi-curve values, add creation of masterplot
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2020-07-05 11:04:32 +02:00 |
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a.ott
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89ebeb7fd0
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add ability to fit contrast flipped cells, change error for frequency lists
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2020-07-05 11:03:28 +02:00 |
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a.ott
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405424b6eb
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add get cell name func
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2020-07-05 11:02:22 +02:00 |
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a.ott
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6746208a73
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add function to sort for species
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2020-07-04 12:03:13 +02:00 |
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a.ott
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c517eaa044
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remove duplicate pattern
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2020-07-04 11:29:38 +02:00 |
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a.ott
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ce03ab68c5
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one with everything
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2020-07-04 11:28:33 +02:00 |
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alexanderott
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189293ff0e
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improve ram usage in fitting and fix in sam
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2020-06-14 15:49:10 +02:00 |
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alexanderott
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7f0c89b65f
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Merge branch 'master' of https://github.com/Nyxas/neuronModel
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2020-06-14 13:47:37 +02:00 |
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alexanderott
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3769451f53
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fix calculation of burstiness
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2020-06-14 13:44:06 +02:00 |
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a.ott
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e1609c7ea8
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make ranges coarser for speed
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2020-06-04 17:17:44 +02:00 |
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a.ott
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1962067cd8
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make warning more telling exact
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2020-06-04 17:13:55 +02:00 |
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a.ott
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c5d580512e
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tried to make parrallel fitting not need more and more ram
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2020-06-04 17:13:09 +02:00 |
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a.ott
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7077c5b8e6
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add prototype to plot sam pdf comparisions cell-model
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2020-06-04 17:12:15 +02:00 |
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alexanderott
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13c807f921
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remove typo
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2020-06-01 12:23:53 +02:00 |
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alexanderott
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e75c262532
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add function to test the effect of eod frequency and refractory period
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2020-06-01 12:20:18 +02:00 |
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alexanderott
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c6e07207f3
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add and change functions to run parrelal fitting of cells with const refractory period
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2020-06-01 12:19:31 +02:00 |
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alexanderott
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5a58483edb
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add routine for fitting with const refractory period
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2020-06-01 12:18:42 +02:00 |
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alexanderott
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859faae812
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add test for bustiness
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2020-06-01 12:17:25 +02:00 |
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alexanderott
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8fc99a356d
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add option for test plot in get_bustiness
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2020-06-01 12:17:04 +02:00 |
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alexanderott
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a2da22cd76
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run all cells
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2020-05-27 13:39:28 +02:00 |
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alexanderott
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2a55078894
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add refratory period to fitting, add burstiness error
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2020-05-27 13:36:14 +02:00 |
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a.ott
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44c9024f1f
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add and deleted some files
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2020-05-27 09:14:38 +02:00 |
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a.ott
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5ce24e182d
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add file to run Fitter add parallelization
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2020-05-27 09:14:19 +02:00 |
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a.ott
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db27e7c980
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plot cell reaction to SAM stimulus
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2020-05-27 09:13:39 +02:00 |
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a.ott
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4b4e5c6d14
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add refractory time
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2020-05-27 09:12:28 +02:00 |
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a.ott
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539d8605bd
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add functions to read SAM behaviour of data cells
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2020-05-27 09:11:57 +02:00 |
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a.ott
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55516b64d2
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add file to play with SAM behaviour
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2020-05-27 09:11:23 +02:00 |
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a.ott
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b1c5a6b0a4
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adapt tests to new model behaviour
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2020-05-27 09:10:31 +02:00 |
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a.ott
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9c434117fa
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add way to test routines / add routines
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2020-05-27 09:08:02 +02:00 |
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a.ott
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043303228e
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add simple hand tests
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2020-05-27 09:07:10 +02:00 |
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a.ott
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cc526251a5
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add test_routines folder
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2020-05-26 18:13:14 +02:00 |
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a.ott
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0b26c7e81e
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use ref to data for tests
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2020-05-20 16:21:01 +02:00 |
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a.ott
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4388983ae2
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tests and automatic renaming
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2020-05-20 16:19:36 +02:00 |
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a.ott
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15bcc09655
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add reference and test for detect spikes
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2020-05-20 16:19:36 +02:00 |
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a.ott
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f7ffdcc66f
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change detect spikes approach
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2020-05-20 16:19:36 +02:00 |
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a.ott
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e84ac53657
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change a_delta to start_parameter
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2020-05-20 16:19:36 +02:00 |
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a.ott
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92119373c1
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add second set of parameters add additional variable to check
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2020-05-20 16:19:36 +02:00 |
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a.ott
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e92197d0ba
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renaming of functions
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2020-05-20 16:19:36 +02:00 |
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a.ott
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869923a2be
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add plot_polar for vector strength
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2020-05-20 16:19:36 +02:00 |
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a.ott
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676a0e4945
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adapt for new FiCurve class
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2020-05-20 16:19:36 +02:00 |
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a.ott
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256931845e
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add new getters and plot_mean_freq curves
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2020-05-20 16:19:36 +02:00 |
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a.ott
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d086f4b3a1
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add plotting and saving of f point detection
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2020-05-18 12:19:11 +02:00 |
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a.ott
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a41de94961
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add plotting function for f point detections (model)
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2020-05-18 12:18:47 +02:00 |
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a.ott
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49abc78983
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change sc error
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2020-05-18 12:17:34 +02:00 |
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a.ott
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ba464b3f5e
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bug fix mean_freq plus time trace, add function to find time window for f point detections
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2020-05-18 12:16:56 +02:00 |
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a.ott
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0dfff5768c
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improve f_zero slope error, increase trials for fi_curve_model
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2020-05-18 09:46:06 +02:00 |
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a.ott
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2f0c19ea5a
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lots of changes - errors in f_zero calculation?
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2020-05-13 16:45:12 +02:00 |
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a.ott
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1f82f06209
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separate FIcurve class, change fitter results structure
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2020-05-12 14:14:55 +02:00 |
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a.ott
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c1db288f97
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save graphs during fitting process
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2020-05-11 15:28:03 +02:00 |
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a.ott
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11c37c9f2a
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seperate baseline attribute calculation
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2020-05-11 13:56:56 +02:00 |
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