nkoch/model_mutations_2022
2
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity

Commit Graph

  • 9b1766af2e updated spacing in Fig 1 and section numbering in diff tex file master nkoch1 2023-04-25 10:45:15 -04:00
  • 70ea74b237 small changes nkoch1 2023-04-25 09:45:17 -04:00
  • 66b2295de3 update bar width in Fig 7 nkoch1 2023-04-24 20:28:50 -04:00
  • a59dc0eb40 update Fig 1, Fig 2 and diff tex file nkoch1 2023-04-24 19:42:23 -04:00
  • 110e313f56 improved rebuttal Jan Benda 2023-04-25 00:34:15 +02:00
  • cbef274c16 added gitignore Jan Benda 2023-04-24 23:51:42 +02:00
  • fd82f19e31 emphasize more ionic current composition Jan Benda 2023-04-24 23:49:44 +02:00
  • b6b9e1b0d7 updates from Stephan and Lukas comments nkoch1 2023-04-24 10:19:56 -04:00
  • e1ea051964 updated figures to be correct size nkoch1 2023-04-22 18:01:55 -04:00
  • 00d0e9f3ab updated figures to be correct size nkoch1 2023-04-22 18:00:54 -04:00
  • a802a9f6d0 More changes based on discussion with Jan and Lukas nkoch1 2023-04-22 11:24:43 -04:00
  • ea38cddf11 update figures based on discussion with Jan and Lukas and added gmax distribution figure nkoch1 2023-04-22 00:43:46 -04:00
  • 251c622d1b changes from discussion with Lukas nkoch1 2023-04-21 10:43:13 -04:00
  • 982dfd7f16 Fixed typo in figure 1 schematic nkoch1 2023-04-18 11:42:41 -04:00
  • c5af571dec changes to Frontiers_manuscript/For_Submission/Koch_frontiers_revised and addition of Frontiers_manuscript/For_Submission/Koch_frontiers_diff for differences using Latexdiff nkoch1 2023-04-17 23:32:45 -04:00
  • 7a7f3c427f fixed arrow width issue in summary_fig nkoch1 2023-04-17 12:32:58 -04:00
  • 041659668f updated potential summary figure nkoch1 2023-04-17 12:27:00 -04:00
  • 896790390a add summary_fig.py as a tenative summary figure nkoch1 2023-04-16 23:16:34 -04:00
  • a49a1b8034 add ./For_Submission/Koch_reviewer_comments to address reviewer comments nkoch1 2023-04-16 17:08:19 -04:00
  • 78bd33da4e some more fixes Jan Benda 2023-03-27 14:41:12 +02:00
  • 5c8f62e2c6 fixed bib file Jan Benda 2023-03-27 14:18:00 +02:00
  • f1c6ca483a small changes to Koch_ref nkoch1 2023-03-19 14:23:53 -04:00
  • 0b91cbf973 clean up Frontiers_manuscript/Koch_frontiers.tex nkoch1 2023-03-18 00:17:36 -04:00
  • 45bca69dee Update and clean-up ref.bib and rename to Koch_ref.bib in ./Frontiers_manuscript nkoch1 2023-03-18 00:08:10 -04:00
  • bd11713549 few fixes Jan Benda 2023-03-17 10:34:10 +01:00
  • 845fb42c21 small changes to supplementary file nkoch1 2023-03-13 15:24:21 -04:00
  • 314ac5a6c4 preparing for Frontiers submission in /Frontiers_manuscript/For_Submission/ nkoch1 2023-03-13 15:08:34 -04:00
  • c9b2845a2a small changes to frontiers manuscript nkoch1 2023-03-06 22:39:04 -05:00
  • 275fb4062a changes from meeting 06.03.2023; changed cell-type to neuron-type throughout, K to Kd throughout (including Fig 3 and 4), added references nkoch1 2023-03-06 14:22:34 -05:00
  • 6549cc0745 added .cls files nkoch1 2023-03-06 10:19:15 -05:00
  • 64669bccd2 Started working on "Contribution to the field" section; Hard references for Supplementary Material nkoch1 2023-02-25 10:34:22 -05:00
  • 0052e98030 Started putting manuscript into Frontiers format nkoch1 2023-02-23 18:27:52 -05:00
  • 667ba43a03 Typo and grammar changes from reviewers nkoch1 2023-02-06 19:54:37 -05:00
  • e885cdcbaa remove author list and affiliations for double blind review nkoch1 2022-12-23 11:40:02 -07:00
  • 0635b270fb small formatting corrections nkoch1 2022-12-20 13:41:24 -07:00
  • 0dcc7595bb more small cleanup nkoch1 2022-12-20 12:12:57 -07:00
  • ddbc1741c5 Small changes nkoch1 2022-12-14 22:33:33 -07:00
  • 94929be6a5 Incorporated Uli's comments, and updated and cleaned up manuscript.tex by removing old comments and adjusting formatting/layout nkoch1 2022-12-14 07:47:01 -05:00
  • 494915d58c Small potential change in red nkoch1 2022-12-06 13:42:11 -05:00
  • cc0b23fcc1 started working on Stephan's comments nkoch1 2022-12-05 23:18:26 -05:00
  • 2cc41ff650 Added suggestion from Lukas nkoch1 2022-12-01 13:12:33 -05:00
  • 93e4840e10 small suggestion sonnenberg 2022-12-01 18:47:32 +01:00
  • 739dde6042 Update python header in .py files in ./Code nkoch1 2022-11-22 14:35:03 -05:00
  • c0c5d1f087 Shortened introduction after meeting nkoch1 2022-11-22 14:06:40 -05:00
  • 93ab5c1792 Added a few more comments to code nkoch1 2022-11-12 00:11:53 -05:00
  • 9037e1a016 Update: code cleaned up nkoch1 2022-11-08 10:09:02 -05:00
  • ce46f8859a Small changes to introduction and started workin gon Code caption nkoch1 2022-11-07 10:38:16 -05:00
  • 72a840de23 Start preparing manuscript.tex towards submission format and working on code nkoch1 2022-11-05 22:37:57 -04:00
  • 3f169ba35e Potential changes to the introduction nkoch1 2022-11-01 13:32:37 -04:00
  • 6c2ba406b8 Discussion and changes to abstract nkoch1 2022-10-27 11:06:25 -04:00
  • 2b537f790a Re-wrote abstract nkoch1 2022-10-19 11:13:08 -04:00
  • 40607f3ef2 More changes in introduction nkoch1 2022-10-13 10:29:13 -04:00
  • 339d216a67 Started shortening introduction nkoch1 2022-10-12 12:17:09 -04:00
  • ad3a5c9945 Started addressing comments from meeting in Tuebingen nkoch1 2022-10-02 20:02:27 +02:00
  • 80f1d1cd8f a few fixes Jan Benda 2022-09-27 17:19:13 +02:00
  • cea8ac8596 Even more small changes to manuscript.tex and ref.bib nkoch1 2022-09-25 10:09:57 +02:00
  • 9286475840 further work on comments and manuscript nkoch1 2022-09-24 21:50:51 +02:00
  • c945baf784 keep working on manuscript nkoch1 2022-09-24 18:16:44 +02:00
  • b005b04937 added figure plotting scripts *_letters.py to plot using models named by letter nkoch1 2022-09-24 16:35:13 +02:00
  • 3ba75f8ce2 Changed model names to model A,B,C,... in the text nkoch1 2022-09-24 12:25:13 +02:00
  • b8aa1e10a2 started working after meeting with Stephan and Uli nkoch1 2022-09-22 20:07:14 +02:00
  • 3bcfb4a830 Changes from meeting with Jan and Lukas nkoch1 2022-09-20 16:47:49 +02:00
  • 0d4eb27b1f small changes to manuscript.tex nkoch1 2022-09-18 11:05:51 +02:00
  • 387c1c907d Worked on Uli's comments after meeting with Lukas nkoch1 2022-09-05 15:34:56 -04:00
  • c79560d191 Started working on Uli's comments nkoch1 2022-09-04 22:45:56 -04:00
  • c2c6a9cc78 Updated Code README.md nkoch1 2022-08-28 16:01:02 -04:00
  • 47f5c1db02 Functions and plotting scripts for each model, sensitivity analysis in each model and KCNA1 mutations in each model nkoch1 2022-08-28 15:57:33 -04:00
  • 64e663d857 added statistical_table.tex and relevant superscripts in results nkoch1 2022-07-30 19:33:26 -04:00
  • 1e9d300c40 clean up old comments in manuscript.tex nkoch1 2022-07-30 19:02:56 -04:00
  • 800c4025f2 changed citations in bibliography with more than 20 authors to First Auther et al. nkoch1 2022-07-30 18:57:58 -04:00
  • 2d4e8110dc more small changes/typos fixed nkoch1 2022-07-21 13:10:10 -04:00
  • ea759e49fe small changes observed during word file preparation nkoch1 2022-07-20 22:52:34 -04:00
  • 8a8f0091cd Update after meeting about discussion and paper - before sending to Uli and Stephan nkoch1 2022-07-20 21:47:08 -04:00
  • e591d20576 added comment from discussion with Lukas nkoch1 2022-07-14 09:55:02 -04:00
  • e2d7305e89 Comment on Lukas's and a suggestion nkoch1 2022-06-30 22:18:13 -04:00
  • 99b80adc48 one comment sonnenberg 2022-06-30 13:32:07 +02:00
  • 6e66cae592 small changes nkoch1 2022-06-28 22:18:26 -04:00
  • 4c7163c6c9 further small changes to discussion sonnenberg 2022-06-28 14:15:31 +02:00
  • 6afdd7843d split some sentences in discussion for (hopefully) better clarity sonnenberg 2022-06-28 11:58:28 +02:00
  • 11d574c806 Work on discussion based on meeting today nkoch1 2022-06-23 17:45:51 -04:00
  • 0d24b6a893 conference notes with \notels sonnenberg 2022-06-23 15:20:23 +02:00
  • 1d1208aa3e small changes to discussion nkoch1 2022-06-22 11:40:41 -04:00
  • ccb7bf667c small changes to introductory discussion LukasSonnenberg 2022-06-22 10:01:43 +02:00
  • 86206005bb more changes to discussion nkoch1 2022-06-19 21:42:06 -04:00
  • 0132812569 started working on Jan's discussion comments nkoch1 2022-06-14 23:10:41 -04:00
  • 76c0c419ef comments on discussion janscience 2022-06-14 15:51:59 +02:00
  • 6315f96a5c small fixes janscience 2022-06-14 15:14:52 +02:00
  • a0f64fd365 Changed firing_characterization-jb.py to firing_characterization.py and old firing_characterization file to firing_characterization_old.py also renamed ramp_examples.py as ramp_firing.py; cleaned up comments and code for rheobase_correlation.py, AUC_correlation.py, diversity_in_firing.py, ramp_firing.py, simulation_model_comparison.py nkoch1 2022-06-11 20:28:22 -04:00
  • cf0e2608bb updated figure legends for fig 3 and 4 for new figure versions nkoch1 2022-05-23 22:16:35 -04:00
  • 905b57d3b8 update arrow version of firing_characterization nkoch1 2022-05-23 11:51:42 -04:00
  • 5aaf7abd4a little fixes and removed some comments Jan Benda 2022-05-23 12:20:43 +02:00
  • 58a435a0c9 Rheobase results section rework nkoch1 2022-05-22 22:50:41 -04:00
  • 08c1111387 Unify Delta rheobase and normalized delta rheobase throughout methods and results by creating new commands \drheo and \ndAUC nkoch1 2022-05-22 12:38:21 -04:00
  • 65869fc273 added arrows version of figure 2 nkoch1 2022-05-21 00:28:52 -04:00
  • 041782c002 small changes based on discussion, more to come tomorrow nkoch1 2022-05-21 00:26:49 -04:00
  • 6c28f34dc0 updated figures based on discussion nkoch1 2022-05-21 00:18:33 -04:00
  • 493ed7b1e7 added notes from our discussion Jan Benda 2022-05-20 16:11:06 +02:00
  • d06b079fcd first round results done Jan Benda 2022-05-20 10:11:11 +02:00
  • 208954ee85 LOF/GOF? in figure Jan Benda 2022-05-20 09:08:38 +02:00
  • 4497aaf4af modified AUC_correlation, rheobase_correlation, ramp_firing nkoch1 2022-05-20 00:21:14 -04:00