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README.md

Tracking tools

Small collection of tools that should help to work with the tracking data.

Contents

  1. image_marker.py Tool to set markers in an image, respectively a single frame of a movie.
  2. tracking_result.py defines a small class easing the handling of DeepLabCut h5 files containing the tracking results.
  3. test.py scirpt to demonstrate using the aforementioned files/classes.

Requirements

  • Open CV - for opening movies (to install pip3 install opencv-python-headless)
  • pandas - For reading the h5 files dumped by DeepLabCut (pip3 install pandas)
  • matplotlib - For plotting