a.ott
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d29e6cded2
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add figures for stimuli
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2020-07-14 17:26:13 +02:00 |
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a.ott
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c64add286f
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add scripts to create plots and read info from data
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2020-07-14 17:25:42 +02:00 |
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a.ott
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378ead984d
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add more papers to read
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2020-07-14 17:24:40 +02:00 |
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a.ott
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7de1e31134
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include latex compilation files
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2020-07-09 14:03:14 +02:00 |
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a.ott
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3b04f618e8
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update data path
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2020-07-09 14:02:30 +02:00 |
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a.ott
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7963058040
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increase weights for baseline parameters
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2020-07-09 14:01:21 +02:00 |
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a.ott
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a176bede4c
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update
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2020-07-09 14:00:57 +02:00 |
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a.ott
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7f8391ba4f
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plot burstiness
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2020-07-09 14:00:23 +02:00 |
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a.ott
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bf8634a247
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add sorting for vector strength and burstiness
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2020-07-09 13:59:46 +02:00 |
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a.ott
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fc9065e31a
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update sources ?
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2020-07-09 13:56:04 +02:00 |
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a.ott
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6f09627103
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update sources
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2020-07-09 13:54:26 +02:00 |
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a.ott
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5941db40cc
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add example method structure
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2020-07-07 11:45:25 +02:00 |
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a.ott
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6313de9728
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increase trials for the results that are saved, a lot
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2020-07-07 11:35:20 +02:00 |
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a.ott
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8d81aea9fe
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increase trials for FiCurve in error calc
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2020-07-07 11:30:13 +02:00 |
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a.ott
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3faabb353b
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make eod calculation more lightweight, save/load results to a file
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2020-07-07 11:29:35 +02:00 |
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a.ott
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dbd28a7bd3
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remove print out
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2020-07-07 11:28:10 +02:00 |
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a.ott
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ad62b31abc
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improve eod calculation/detection
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2020-07-06 15:22:53 +02:00 |
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a.ott
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71115d83d0
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add set a_zero to a baseline value before simulation
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2020-07-06 14:12:11 +02:00 |
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a.ott
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a52dc65626
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new notes from henriettes thesis
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2020-07-06 11:53:30 +02:00 |
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a.ott
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3880e32fdc
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new script to read and analyse the generated fits
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2020-07-06 11:52:38 +02:00 |
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a.ott
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f3aa721745
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formating
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2020-07-06 11:52:05 +02:00 |
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a.ott
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16621fb78c
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test modelFit
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2020-07-05 11:06:42 +02:00 |
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a.ott
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222af65bd6
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save more data after Fit
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2020-07-05 11:06:05 +02:00 |
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a.ott
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574f4a80f2
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add loading of fi-curve values, add creation of masterplot
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2020-07-05 11:04:32 +02:00 |
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a.ott
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89ebeb7fd0
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add ability to fit contrast flipped cells, change error for frequency lists
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2020-07-05 11:03:28 +02:00 |
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a.ott
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405424b6eb
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add get cell name func
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2020-07-05 11:02:22 +02:00 |
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a.ott
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6746208a73
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add function to sort for species
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2020-07-04 12:03:13 +02:00 |
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a.ott
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c517eaa044
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remove duplicate pattern
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2020-07-04 11:29:38 +02:00 |
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a.ott
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ce03ab68c5
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one with everything
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2020-07-04 11:28:33 +02:00 |
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alexanderott
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189293ff0e
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improve ram usage in fitting and fix in sam
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2020-06-14 15:49:10 +02:00 |
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alexanderott
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7f0c89b65f
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Merge branch 'master' of https://github.com/Nyxas/neuronModel
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2020-06-14 13:47:37 +02:00 |
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alexanderott
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3769451f53
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fix calculation of burstiness
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2020-06-14 13:44:06 +02:00 |
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a.ott
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e1609c7ea8
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make ranges coarser for speed
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2020-06-04 17:17:44 +02:00 |
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a.ott
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1962067cd8
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make warning more telling exact
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2020-06-04 17:13:55 +02:00 |
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a.ott
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c5d580512e
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tried to make parrallel fitting not need more and more ram
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2020-06-04 17:13:09 +02:00 |
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a.ott
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7077c5b8e6
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add prototype to plot sam pdf comparisions cell-model
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2020-06-04 17:12:15 +02:00 |
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alexanderott
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13c807f921
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remove typo
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2020-06-01 12:23:53 +02:00 |
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alexanderott
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e75c262532
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add function to test the effect of eod frequency and refractory period
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2020-06-01 12:20:18 +02:00 |
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alexanderott
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c6e07207f3
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add and change functions to run parrelal fitting of cells with const refractory period
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2020-06-01 12:19:31 +02:00 |
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alexanderott
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5a58483edb
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add routine for fitting with const refractory period
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2020-06-01 12:18:42 +02:00 |
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alexanderott
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859faae812
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add test for bustiness
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2020-06-01 12:17:25 +02:00 |
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alexanderott
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8fc99a356d
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add option for test plot in get_bustiness
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2020-06-01 12:17:04 +02:00 |
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alexanderott
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a2da22cd76
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run all cells
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2020-05-27 13:39:28 +02:00 |
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alexanderott
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2a55078894
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add refratory period to fitting, add burstiness error
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2020-05-27 13:36:14 +02:00 |
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a.ott
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44c9024f1f
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add and deleted some files
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2020-05-27 09:14:38 +02:00 |
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a.ott
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5ce24e182d
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add file to run Fitter add parallelization
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2020-05-27 09:14:19 +02:00 |
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a.ott
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db27e7c980
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plot cell reaction to SAM stimulus
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2020-05-27 09:13:39 +02:00 |
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a.ott
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4b4e5c6d14
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add refractory time
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2020-05-27 09:12:28 +02:00 |
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a.ott
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539d8605bd
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add functions to read SAM behaviour of data cells
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2020-05-27 09:11:57 +02:00 |
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a.ott
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55516b64d2
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add file to play with SAM behaviour
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2020-05-27 09:11:23 +02:00 |
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