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scientificComputing/projects/project_fano_time/solution/lifspikes.m

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Matlab

function spikes = lifspikes(trials, input, tmaxdt, D)
% Generate spike times of a leaky integrate-and-fire neuron.
% trials: the number of trials to be generated
% input: the stimulus either as a single value or as a vector
% tmaxdt: in case of a single value stimulus the duration of a trial
% in case of a vector as a stimulus the time step
% D: the strength of additive white noise
tau = 0.01;
if nargin < 4
D = 1e0;
end
vreset = 0.0;
vthresh = 10.0;
dt = 5e-5;
if max(size(input)) == 1
input = input * ones(ceil(tmaxdt/dt), 1);
else
dt = tmaxdt;
end
spikes = cell(trials, 1);
for k=1:trials
times = [];
j = 1;
v = vreset + (vthresh-vreset)*rand(1);
noise = sqrt(2.0*D)*randn(length(input), 1)/sqrt(dt);
for i=1:length(noise)
v = v + (- v + noise(i) + input(i))*dt/tau;
if v >= vthresh
v = vreset;
spiketime = i*dt;
times(j) = spiketime;
j = j + 1;
end
end
spikes{k} = times;
end
end