Merge branch 'master' of https://whale.am28.uni-tuebingen.de/git/raab/GP2023_chirp_detection

code/get_behaviour.py

@@ -0,0 +1,35 @@
+import os 
+from paramiko import SSHClient
+from scp import SCPClient
+from IPython import embed
+from pandas import read_csv
+
+ssh = SSHClient()
+ssh.load_system_host_keys()
+
+ssh.connect(hostname='kraken',
+            username='efish',
+            password='fwNix4U',
+            )
+
+
+# SCPCLient takes a paramiko transport as its only argument
+scp = SCPClient(ssh.get_transport())
+
+data = read_csv('../recs.csv')
+foldernames = data['recording'].values
+
+directory = f'/Users/acfw/Documents/uni_tuebingen/chirpdetection/GP2023_chirp_detection/data/mount_data/'
+for foldername in foldernames:
+
+    if not os.path.exists(directory+foldername):
+        os.makedirs(directory+foldername)
+
+    files = [('-').join(foldername.split('-')[:3])+'.csv','chirp_ids.npy', 'chirps.npy', 'fund_v.npy', 'ident_v.npy', 'idx_v.npy', 'times.npy', 'spec.npy', 'LED_on_time.npy', 'sign_v.npy']
+
+
+    for f in files:
+        scp.get(f'/home/efish/behavior/2019_tube_competition/{foldername}/{f}',
+                directory+foldername)
+
+scp.close()