From fc27fabdb3b06f1f082b70a14aa2acd0e49a6d5a Mon Sep 17 00:00:00 2001
From: wendtalexander <wendtalexander@protonmail.com>
Date: Tue, 24 Jan 2023 09:05:57 +0100
Subject: [PATCH 1/2] scp files
---
code/get_behaviour.py | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
create mode 100644 code/get_behaviour.py
diff --git a/code/get_behaviour.py b/code/get_behaviour.py
new file mode 100644
index 0000000..74dcc9d
--- /dev/null
+++ b/code/get_behaviour.py
@@ -0,0 +1,31 @@
+import os
+from paramiko import SSHClient
+from scp import SCPClient
+from IPython import embed
+
+ssh = SSHClient()
+ssh.load_system_host_keys()
+
+ssh.connect(hostname='kraken',
+ username='efish',
+ password='fwNix4U',
+ )
+embed()
+
+# SCPCLient takes a paramiko transport as its only argument
+scp = SCPClient(ssh.get_transport())
+
+foldername = '2020-03-16-10_00'
+directory = f'/Users/acfw/Documents/uni_tuebingen/chirpdetection/GP2023_chirp_detection/data/mount_data/'
+
+if not os.path.exists(directory+foldername):
+ os.makedirs(directory+foldername)
+
+files = [('-').join(foldername.split('-')[:3])+'.csv','chirp_ids.npy', 'chirps.npy', 'fund_v.npy', 'ident_v.npy', 'idx_v.npy', 'times.npy', 'spec.npy', 'LED_on_time.npy', 'sign_v.npy']
+
+
+for f in files:
+ scp.get(f'/home/efish/behavior/2019_tube_competition/{foldername}/{f}',
+ directory+foldername)
+
+scp.close()
From fce35030499a128bcd2e564d070e1574b5fc6ad5 Mon Sep 17 00:00:00 2001
From: wendtalexander <wendtalexander@protonmail.com>
Date: Tue, 24 Jan 2023 09:11:54 +0100
Subject: [PATCH 2/2] finished scp script
---
code/get_behaviour.py | 20 ++++++++++++--------
1 file changed, 12 insertions(+), 8 deletions(-)
diff --git a/code/get_behaviour.py b/code/get_behaviour.py
index 74dcc9d..36311ca 100644
--- a/code/get_behaviour.py
+++ b/code/get_behaviour.py
@@ -2,6 +2,7 @@ import os
from paramiko import SSHClient
from scp import SCPClient
from IPython import embed
+from pandas import read_csv
ssh = SSHClient()
ssh.load_system_host_keys()
@@ -10,22 +11,25 @@ ssh.connect(hostname='kraken',
username='efish',
password='fwNix4U',
)
-embed()
+
# SCPCLient takes a paramiko transport as its only argument
scp = SCPClient(ssh.get_transport())
-foldername = '2020-03-16-10_00'
+data = read_csv('../recs.csv')
+foldernames = data['recording'].values
+
directory = f'/Users/acfw/Documents/uni_tuebingen/chirpdetection/GP2023_chirp_detection/data/mount_data/'
+for foldername in foldernames:
-if not os.path.exists(directory+foldername):
- os.makedirs(directory+foldername)
+ if not os.path.exists(directory+foldername):
+ os.makedirs(directory+foldername)
-files = [('-').join(foldername.split('-')[:3])+'.csv','chirp_ids.npy', 'chirps.npy', 'fund_v.npy', 'ident_v.npy', 'idx_v.npy', 'times.npy', 'spec.npy', 'LED_on_time.npy', 'sign_v.npy']
+ files = [('-').join(foldername.split('-')[:3])+'.csv','chirp_ids.npy', 'chirps.npy', 'fund_v.npy', 'ident_v.npy', 'idx_v.npy', 'times.npy', 'spec.npy', 'LED_on_time.npy', 'sign_v.npy']
-for f in files:
- scp.get(f'/home/efish/behavior/2019_tube_competition/{foldername}/{f}',
- directory+foldername)
+ for f in files:
+ scp.get(f'/home/efish/behavior/2019_tube_competition/{foldername}/{f}',
+ directory+foldername)
scp.close()