a0f64fd365
and old firing_characterization file to firing_characterization_old.py also renamed ramp_examples.py as ramp_firing.py; cleaned up comments and code for rheobase_correlation.py, AUC_correlation.py, diversity_in_firing.py, ramp_firing.py, simulation_model_comparison.py
183 lines
5.4 KiB
Python
183 lines
5.4 KiB
Python
import numpy as np
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import matplotlib.pyplot as plt
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import matplotlib.gridspec as gridspec
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import string
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# from plotstyle import plot_style
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from plotstyle import scheme_style
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def cm2inch(*tupl):
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inch = 2.54
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if isinstance(tupl[0], tuple):
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return tuple(i/inch for i in tupl[0])
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else:
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return tuple(i/inch for i in tupl)
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def plot_sqrt(ax, a=1, b=0.2, c=100, d=0):
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x = np.linspace(0, 1, 10000)
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y = c*np.sqrt(a*(x - b)) + d
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ax.plot(x, y)
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ax.set_xlabel('Current [nA]')
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ax.set_ylabel('Frequency [Hz]')
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ax.set_xlim(0,1)
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ax.set_ylim(0, ax.get_ylim()[1])
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def plot_AUC(ax, a=1, b=0.2, c=100, d=0, width=0.2):
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x = np.linspace(0, 1, 10000)
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y = c*np.sqrt(a*(x - b)) + d
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ax.plot(x, y, 'k')
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ax.set_xlabel('Current [nA]')
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ax.set_ylabel('Frequency [Hz]')
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ax.fill_between(x,y, where=(x<=b+width), color='c')
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ax.set_xlim(0,1)
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ax.set_ylim(0, 100)
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ax.yaxis.set_major_locator(ticker.MultipleLocator(50))
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def plot_diff_sqrt(ax, a=1, b=0.2, c=100, d=0, a2=1, b2=0.2, c2=100, d2=0):
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x = np.linspace(0, 1, 10000)
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y = c*np.sqrt(a*(x - b)) + d
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y2 = c2 * np.sqrt(a2 * (x - b2)) + d2
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ax.plot(x, y, 'k')
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ax.plot(x, y2, 'b')
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ax.set_xlim(0,1)
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ax.set_ylim(0, ax.get_ylim()[1])
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ax.set_xticks([])
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ax.set_yticks([])
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def plot_quadrant(ax):
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ax.plot(ax.get_xlim(),[0,0], '--k', linewidth=1.25)
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ax.plot([0,0],ax.get_ylim(), '--k', linewidth=1.25)
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ax.tick_params(axis=u'both', which=u'both', length=0)
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ax.set_xticks([-0.55, 0, 0.55])
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a = ax.get_xticks().tolist()
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a[0] = '\u2212'
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a[1] = 0
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a[2] = '+'
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ax.set_xticklabels(a)
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ax.set_yticks([-0.55, 0, 0.55])
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b = ax.get_xticks().tolist()
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b[0] = '\u2212'
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b[1] = 0
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b[2] = '+'
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ax.set_yticklabels(b)
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# ax.tick_params(labelsize=16)
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# ax.set_yticks([0])
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# ax.axis('off')
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# plot_style()
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scheme_style()
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fig = plt.figure(figsize=cm2inch(7, 12))
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gs = gridspec.GridSpec(3,2, top=0.95, bottom=0.1, left=0.15, right = 0.95, hspace=0.8, wspace=0.6)
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ax1 = fig.add_subplot(gs[0,:])
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plot_AUC(ax1, width=0.2)
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ax3 = fig.add_subplot(gs[1:, :])
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# add panel letter labels
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ax_list = fig.axes
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i =0
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for a in ax_list:
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a.text(-0.18, 1.08, string.ascii_uppercase[i], transform=a.transAxes,size=16, weight='bold')
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i += 1
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ax3.set_ylabel('$\Delta$ AUC')
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ax3.set_xlabel('$\Delta$ rheobase')
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ax3.set_xlim(-1, 1)
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ax3.set_ylim(-1, 1)
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plot_quadrant(ax3) # plot delineation into quadrants
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inset_ylim = (0, 100)
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# top left
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lfsize = 8
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ax3.text(x=-0.75, y=0.25, s=r'''$\uparrow$ AUC
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$\downarrow$ rheobase''', fontsize=lfsize)
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ax3_TL = ax3.inset_axes([0, 0.8, 0.3, 0.2])
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plot_diff_sqrt(ax3_TL, b2=0.1, c2=200)
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ax3_TL.set_ylim(inset_ylim)
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# top right
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ax3.text(x=0.25, y=0.25, s=r'''$\uparrow$ AUC
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$\uparrow$ rheobase''', fontsize=lfsize)
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ax3_TR = ax3.inset_axes([0.7, 0.8, 0.3, 0.2])
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plot_diff_sqrt(ax3_TR, b2=0.4, c2=200)
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ax3_TR.set_ylim(inset_ylim)
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# bottom left
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ax3.text(x=-0.75, y=-0.35, s=r'''$\downarrow$ AUC
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$\downarrow$ rheobase''', fontsize=lfsize)
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ax3_BL = ax3.inset_axes([0, 0, 0.3, 0.2])
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plot_diff_sqrt(ax3_BL, b2=0.1, c2=75)
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ax3_BL.set_ylim(inset_ylim)
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# bottom right
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ax3.text(x=0.25, y=-0.35, s=r'''$\downarrow$ AUC
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$\uparrow$ rheobase''', fontsize=lfsize)
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ax3_BR = ax3.inset_axes([0.7, 0, 0.3, 0.2])
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plot_diff_sqrt(ax3_BR, b2=0.4, c2=75)
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ax3_BR.set_ylim(inset_ylim)
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# fig.savefig('./Figures/firing_characterization.pdf', bbox_inches='tight')
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print(fig.dpi)
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fig.set_size_inches(cm2inch(8.17,15))
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fig.savefig('./Figures/firing_characterization_old.pdf', dpi=fig.dpi) #bbox_inches='tight', dpi=fig.dpi
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plt.show()
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#%% OLD
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# fig = plt.figure()
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# # fig, axs = plt.subplots(2, 3, figsize=(6, 4))
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# # fig.subplots_adjust(top=0.95, bottom=0.1, left=0.1, right=0.95, hspace=0.6, wspace=0.6)
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# gs = gridspec.GridSpec(2,3, top=0.95, bottom=0.1, left=0.1, right = 0.95, hspace=0.6, wspace=0.6)
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# ax1 = fig.add_subplot(gs[0,0])
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# plot_AUC(ax1, width=0.2)
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# ax2 = fig.add_subplot(gs[1, 0])
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# ax3 = fig.add_subplot(gs[:, 1:])
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# # ax_list = fig.axes
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# # import string
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# # i =0
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# # for a in ax_list:
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# # a.text(-0.13, 1.05, string.ascii_uppercase[i], transform=a.transAxes,size=12, weight='bold')
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# # i += 1
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# ax3.set_ylabel('$\Delta$ AUC')
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# ax3.set_xlabel('$\Delta$ rheobase')
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# ax3.set_xlim(-1,1)
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# ax3.set_ylim(-1,1)
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# plot_quadrant(ax3)
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#
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# # top left
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# ax3.text(x=-0.75, y=0.25, s=r'''$\uparrow$ AUC
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# $\downarrow$ rheobase''')
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# ax3_TL = ax3.inset_axes([0,0.8,0.3,0.2])
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# plot_diff_sqrt(ax3_TL, b2=0.1, c2=200)
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#
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# # top right
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# ax3.text(x=0.25, y=0.25, s=r'''$\uparrow$ AUC
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# $\uparrow$ rheobase''')
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# ax3_TR = ax3.inset_axes([0.7, 0.8, 0.3, 0.2])
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# plot_diff_sqrt(ax3_TR, b2=0.4, c2=200)
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#
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# # bottom left
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# ax3.text(x=-0.75, y=-0.35, s=r'''$\downarrow$ AUC
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# $\downarrow$ rheobase''')
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# ax3_BL = ax3.inset_axes([0, 0, 0.3, 0.2])
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# plot_diff_sqrt(ax3_BL, b2=0.1, c2=75)
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#
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# # bottom right
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# ax3.text(x=0.25, y=-0.35, s=r'''$\downarrow$ AUC
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# $\uparrow$ rheobase''')
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# ax3_BR = ax3.inset_axes([0.7, 0, 0.3, 0.2])
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# plot_diff_sqrt(ax3_BR, b2=0.4, c2=75)
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#
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# # ax3_TL.sharey(ax3_TR)
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#
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# # ax3_TL.get_shared_x_axes().join(ax3_TL, ax3_TR, ax3_BL, ax3_BR)
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# # ax3_TL.get_shared_y_axes().join(ax3_TL, ax3_TR, ax3_BL, ax3_BR)
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# ax_list = [ax3_TL, ax3_TR, ax3_BL, ax3_BR] #< your axes objects
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# ax_list[0].get_shared_x_axes().join(*ax_list)
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# plt.show()
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#
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# # plot_sqrt(axs[0,0])
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# # plot_temperature(axs[0,1])
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# # plot_signal_n_power(axs[1,0], axs[1,1])
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# # fig.savefig('coolresult.pdf')
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#
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