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update arrow version of firing_characterization

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nkoch1 2022-05-23 11:51:42 -04:00
parent 5aaf7abd4a
commit 905b57d3b8
3 changed files with 9 additions and 9 deletions
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14
Figures/firing_characterization-jb.py
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@ -348,9 +348,9 @@ lfsize = 8
ax3.text(x=-0.9, y=0.7, s='$\\uparrow$ AUC\n$\\downarrow$ rheobase', fontsize=lfsize) ax3.text(x=-0.9, y=0.7, s='$\\uparrow$ AUC\n$\\downarrow$ rheobase', fontsize=lfsize)
ax3.text(-0.95, 0.35, 'GOF', ha='right') ax3.text(-0.95, 0.35, 'GOF', ha='right')
ax3_TL = ax3.inset_axes([0.07, 0.6, 0.3, 0.2]) ax3_TL = ax3.inset_axes([0.07, 0.6, 0.3, 0.2])
plot_diff_sqrt(ax3_TL, b2=0.1, c2=200) plot_diff_sqrt(ax3_TL, b2=0.09, c2=200)
ax3_TL.set_ylim(inset_ylim) ax3_TL.set_ylim(inset_ylim)
ax3_TL.annotate('', (0.25, 15), (0.1, 27), arrowprops=dict(arrowstyle="<|-", color=colorslist[2],lw=0.5, mutation_scale=5), zorder=-10) # ax3_TL.annotate('', (0.25, 7), (0.085, 7), arrowprops=dict(arrowstyle="<|-", color=colorslist[2],lw=0.5, mutation_scale=5), zorder=-10) #
ax3_TL.annotate('', (0.55, 55), (0.3, 90), arrowprops=dict(arrowstyle="<|-", color=colorslist[2],lw=0.5, mutation_scale=5), zorder=-10) # ax3_TL.annotate('', (0.55, 55), (0.3, 90), arrowprops=dict(arrowstyle="<|-", color=colorslist[2],lw=0.5, mutation_scale=5), zorder=-10) #
# top right # top right
ax3.text(x=0.22, y=0.7, s='$\\uparrow$ AUC\n$\\uparrow$ rheobase', fontsize=lfsize) ax3.text(x=0.22, y=0.7, s='$\\uparrow$ AUC\n$\\uparrow$ rheobase', fontsize=lfsize)
@ -358,16 +358,16 @@ ax3.text(0.95, 0.35, 'LOF/\nGOF?')
ax3_TR = ax3.inset_axes([0.63, 0.6, 0.3, 0.2]) ax3_TR = ax3.inset_axes([0.63, 0.6, 0.3, 0.2])
plot_diff_sqrt(ax3_TR, b2=0.4, c2=200) plot_diff_sqrt(ax3_TR, b2=0.4, c2=200)
ax3_TR.set_ylim(inset_ylim) ax3_TR.set_ylim(inset_ylim)
ax3_TR.annotate('', (0.2, 15), (0.41, 15), arrowprops=dict(arrowstyle="<|-", color=colorslist[2],lw=0.5, mutation_scale=5), zorder=-10) # ax3_TR.annotate('', (0.17, 7), (0.41, 7), arrowprops=dict(arrowstyle="<|-", color=colorslist[2],lw=0.5, mutation_scale=5), zorder=-10) #
ax3_TR.annotate('', (0.8, 70), (0.6, 90), arrowprops=dict(arrowstyle="<|-", color=colorslist[2],lw=0.5, mutation_scale=5), zorder=-10) # ax3_TR.annotate('', (0.8, 70), (0.6, 90), arrowprops=dict(arrowstyle="<|-", color=colorslist[2],lw=0.5, mutation_scale=5), zorder=-10) #
# bottom left # bottom left
ax3.text(x=-0.9, y=-0.95, s='$\\downarrow$ AUC\n$\downarrow$ rheobase', fontsize=lfsize) ax3.text(x=-0.9, y=-0.95, s='$\\downarrow$ AUC\n$\downarrow$ rheobase', fontsize=lfsize)
ax3.text(-0.95, -0.55, 'GOF/\nLOF?', ha='right') ax3.text(-0.95, -0.55, 'GOF/\nLOF?', ha='right')
ax3_BL = ax3.inset_axes([0.07, 0.15, 0.3, 0.2]) ax3_BL = ax3.inset_axes([0.07, 0.15, 0.3, 0.2])
plot_diff_sqrt(ax3_BL, b2=0.07, c2=65) plot_diff_sqrt(ax3_BL, b2=0.06, c2=65)
ax3_BL.set_ylim(inset_ylim) ax3_BL.set_ylim(inset_ylim)
ax3_BL.annotate('', (0.25, 5), (0.07, 5), arrowprops=dict(arrowstyle="<|-", color=colorslist[2],lw=0.5, mutation_scale=5), zorder=-10) # ax3_BL.annotate('', (0.25, 7), (0.07, 7), arrowprops=dict(arrowstyle="<|-", color=colorslist[2],lw=0.5, mutation_scale=5), zorder=-10) #
ax3_BL.annotate('', (0.8, 80), (0.85, 55), arrowprops=dict(arrowstyle="<|-", color=colorslist[2],lw=0.5, mutation_scale=5), zorder=-10) # ax3_BL.annotate('', (0.8, 80), (0.85, 55), arrowprops=dict(arrowstyle="<|-", color=colorslist[2],lw=0.5, mutation_scale=5), zorder=-10) #
# bottom right # bottom right
@ -376,8 +376,8 @@ ax3.text(0.95, -0.55, 'LOF')
ax3_BR = ax3.inset_axes([0.63, 0.15, 0.3, 0.2]) ax3_BR = ax3.inset_axes([0.63, 0.15, 0.3, 0.2])
plot_diff_sqrt(ax3_BR, b2=0.4, c2=60) plot_diff_sqrt(ax3_BR, b2=0.4, c2=60)
ax3_BR.set_ylim(inset_ylim) ax3_BR.set_ylim(inset_ylim)
ax3_BR.annotate('', (0.2, 15), (0.425, 10), arrowprops=dict(arrowstyle="<|-", color=colorslist[2],lw=0.5, mutation_scale=5), zorder=-10) # ax3_BR.annotate('', (0.18, 7), (0.42, 7), arrowprops=dict(arrowstyle="<|-", color=colorslist[2],lw=0.5, mutation_scale=5), zorder=-10) #
ax3_BR.annotate('', (0.65, 75), (0.8, 37.5), arrowprops=dict(arrowstyle="<|-", color=colorslist[2],lw=0.5, mutation_scale=5), zorder=-10) # ax3_BR.annotate('', (0.7, 75), (0.8, 37.5), arrowprops=dict(arrowstyle="<|-", color=colorslist[2],lw=0.5, mutation_scale=5), zorder=-10) #

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Figures/firing_characterization_arrows.pdf
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4
manuscript.tex
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@ -290,10 +290,10 @@ Neuronal firing is heterogenous across the CNS and a set of neuronal models with
\subsection*{Characterization of Neuronal Firing Properties} \subsection*{Characterization of Neuronal Firing Properties}
\begin{figure}[tp] \begin{figure}[tp]
\centering \centering
\includegraphics[width=0.5\linewidth]{Figures/firing_characterization.pdf} % \includegraphics[width=0.5\linewidth]{Figures/firing_characterization.pdf}
\includegraphics[width=0.5\linewidth]{Figures/firing_characterization_arrows.pdf} \includegraphics[width=0.5\linewidth]{Figures/firing_characterization_arrows.pdf}
\\\notenk{Re-work legend to be in line with new figure} \\\notenk{Re-work legend to be in line with new figure}
\\\notenk{Both done, which one do you like better? I think I like the legend one better, but I'm not sure what the best legend label for the red one I've labelled ``Altered'' is.}\notejb{I really like the arrows! Having two arrows is great. I Would make the lower one always horizontal to make it indicative for the rheobase. If space gets too narrow for this shift the fI curves further appart.} \\\notenk{Both done, which one do you like better? I think I like the legend one better, but I'm not sure what the best legend label for the red one I've labelled ``Altered'' is.}\notejb{I really like the arrows! Having two arrows is great. I Would make the lower one always horizontal to make it indicative for the rheobase. If space gets too narrow for this shift the fI curves further appart.} \notenk{done!}
\linespread{1.}\selectfont \linespread{1.}\selectfont
\caption[]{Characterization of firing with AUC and rheobase. (A) The area under the curve (AUC) of the repetitive firing frequency-current (fI) curve. (B) \caption[]{Characterization of firing with AUC and rheobase. (A) The area under the curve (AUC) of the repetitive firing frequency-current (fI) curve. (B)
Changes in firing as characterized by \(\Delta\)AUC and \(\Delta\)rheobase occupy 4 quadrants separated by no changes in AUC and rheobase. Representative schematic fI curves in blue with respect to a reference fI curve (black) depict the general changes associated with each quadrant.} Changes in firing as characterized by \(\Delta\)AUC and \(\Delta\)rheobase occupy 4 quadrants separated by no changes in AUC and rheobase. Representative schematic fI curves in blue with respect to a reference fI curve (black) depict the general changes associated with each quadrant.}