jgrewe/gp_neurobio
1
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity

read baseline spikes fixed

Browse Source
This commit is contained in:
Jan Grewe 2018-11-12 13:59:56 +01:00
parent f86d1737cb
commit 635f5a2c4e
1 changed files with 4 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

6
code/read_baseline_data.py
View File

@ -19,9 +19,11 @@ def read_baseline_spikes(dataset):
nix_file = nix.File.open(os.path.join(dataset, base), nix.FileMode.ReadOnly) nix_file = nix.File.open(os.path.join(dataset, base), nix.FileMode.ReadOnly)
b = nix_file.blocks[0] b = nix_file.blocks[0]
t = b.tags["BaselineActivity_1"] t = b.tags["BaselineActivity_1"]
spike_times = t.retrieve_data("Spikes-1") spikes_da = b.data_arrays["Spikes-1"]
spike_times = spikes_da[:spikes_da.shape[0]-5000]
baseline_spikes = spike_times[(spike_times > t.position[0]) & (spike_times < (t.position[0] + t.extent[0]))]
nix_file.close() nix_file.close()
return spike_times return baseline_spikes
if __name__ == "__main__": if __name__ == "__main__":