From 635f5a2c4e8c99fff69e75ff56ae171f82d2a5ef Mon Sep 17 00:00:00 2001
From: Jan Grewe <jan.grewe@g-node.org>
Date: Mon, 12 Nov 2018 13:59:56 +0100
Subject: [PATCH] read baseline spikes fixed

---
 code/read_baseline_data.py | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/code/read_baseline_data.py b/code/read_baseline_data.py
index f88c3a9..6db59b5 100644
--- a/code/read_baseline_data.py
+++ b/code/read_baseline_data.py
@@ -19,9 +19,11 @@ def read_baseline_spikes(dataset):
     nix_file = nix.File.open(os.path.join(dataset, base), nix.FileMode.ReadOnly)
     b = nix_file.blocks[0]
     t = b.tags["BaselineActivity_1"]
-    spike_times = t.retrieve_data("Spikes-1")
+    spikes_da = b.data_arrays["Spikes-1"]
+    spike_times = spikes_da[:spikes_da.shape[0]-5000]
+    baseline_spikes = spike_times[(spike_times > t.position[0]) & (spike_times < (t.position[0] + t.extent[0]))]
     nix_file.close()
-    return spike_times
+    return baseline_spikes
     
 
 if __name__ == "__main__":