UptoDate

code/base_chirps.py

@@ -0,0 +1,43 @@
+from read_chirp_data import *
+#import nix_helpers as nh 
+import matplotlib.pyplot as plt
+import numpy as np
+from IPython import embed
+
+
+data_dir = "../data"
+dataset = "2018-11-09-ad-invivo-1"
+#data = ("2018-11-09-ad-invivo-1", "2018-11-09-ae-invivo-1", "2018-11-09-ag-invivo-1", "2018-11-13-aa-invivo-1", "2018-11-13-ac-invivo-1", "2018-11-13-ad-invivo-1", "2018-11-13-ah-invivo-1", "2018-11-13-ai-invivo-1", "2018-11-13-aj-invivo-1", "2018-11-13-ak-invivo-1", "2018-11-13-al-invivo-1", "2018-11-14-aa-invivo-1", "2018-11-14-ac-invivo-1", "2018-11-14-ad-invivo-1", "2018-11-14-af-invivo-1", "2018-11-14-ag-invivo-1", "2018-11-14-ah-invivo-1", "2018-11-14-ai-invivo-1", "2018-11-14-ak-invivo-1", "2018-11-14-al-invivo-1", "2018-11-14-am-invivo-1", "2018-11-14-an-invivo-1")
+spikes = read_chirp_spikes(os.path.join(data_dir, dataset))
+eod = read_chirp_eod(os.path.join(data_dir, dataset))
+times = read_chirp_times(os.path.join(data_dir, dataset))
+
+
+df_map = {}
+for k in spikes.keys():
+	df = k[1]
+	if df in df_map.keys():
+		df_map[df].append(k)
+	else:
+		df_map[df] = [k]
+print(df_map.keys())
+
+e1 = eod[0, '-50Hz', '20%', '100Hz']
+#plt.plot(e1[1])
+#plt.show()
+plt.title('EOD chirps')
+plt.xlabel('Frequency')
+plt.ylabel('Amplitude')
+plt.plot(e1[0],e1[1])
+plt.show()
+
+ct = times[0, '-50Hz', '20%', '100Hz']
+#plt.scatter(ct*1000, np.ones(len(ct)))
+plt.scatter(np.asarray(ct)*1000, np.ones(len(ct)))
+plt.show()
+
+#plt.scatter(spikes[0, '-50Hz', '20%', '100Hz'][0, 0.614])
+
+#print(len(spikes))
+#print(len(eod))
+#print(len(times))

code/liste.py

@@ -1,43 +1,43 @@
 # 9.11.18
 
-aa: quality: poor, depth: -1341
-ab: quality: poor, depth: -1341
-ac: quality: good, depth: -1341
-ad: quality: good, depth: -200
-ae: quality: good, depth: -200
+aa: quality: poor, depth: -1341, base
+ab: quality: poor, depth: -1341, base
+ac: quality: good, depth: -1341, base
+ad: quality: good, depth: -200, base, chirps
+ae: quality: good, depth: -200, chirps
 af: quality: good, depth: -200
-ag: no info.dat
+ag: no info.dat, chirps
 
 
 # 13.11.18
 
-aa: good, -30 µm, maybe no reaction
-ab: good, -309 µm
-ac: poor, -309 µm
-ad: fair, -360 µm
+aa: good, -30 µm, maybe no reaction, base, chirps
+ab: good, -309 µm, base
+ac: poor, -309 µm, chirps
+ad: fair, -360 µm, base, chirps
 ae: fair, -350 µm
-af: good, -440 µm, bursting
-ag: fair, -174 µm
-ah: good, -209 µm
-ai: good, -66.9 µm
-aj: good, -132 µm
-ak: good, -284 µm
-al: good, -286 µm
+af: good, -440 µm, bursting, base
+ag: fair, -174 µm, base
+ah: good, -209 µm, base, chirps, FI, SAM
+ai: good, -66.9 µm, base, chirps, SAM
+aj: good, -132 µm, base, chirps
+ak: good, -284 µm, base, chirps
+al: good, -286 µm, base, chirps, SAM
 
 
 # 14.11.18
 
-aa: good, -184 µm
-ab: fair, -279 µm, no reaction
-ac: fair, -60 µm
-ad: good, -357 µm
-ae: fair, -357 µm
-af: fair, -527 µm, only baseline
-ag: fair, -533 µm
-ah: poor, -505 µm 
-ai: good, -500 µm, still same cell 3x
-aj: poor, -314 µm,no modulation
-ak: good, -140 µm
-al: good, -280 µm
-am: good, -320 µm
-an: good, -434 µm
+aa: good, -184 µm, base, chirps, FI, SAM, noise
+ab: fair, -279 µm, no reaction, base
+ac: fair, -60 µm, base, chirps
+ad: good, -357 µm, base, chirps
+ae: fair, -357 µm, base
+af: fair, -527 µm, base, (chirps)
+ag: fair, -533 µm, base, chirps
+ah: poor, -505 µm, chirps
+ai: good, -500 µm, still same cell 3x, chirps, FI, noise
+aj: poor, -314 µm, no modulation, base
+ak: good, -140 µm, base, chirps, FI, SAM, noise
+al: good, -280 µm, base, chirps, SAM
+am: good, -320 µm, base, chirps, FI, SAM, noise
+an: good, -434 µm, base, chirps, FI, SAM, noise