jgrewe/efish_tracking
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helpers for working with deep lab cut tracking results
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README.md

E-Fish tracking

Tool for easier handling of tracking results.

Installation

1. Clone git repository

git clone https://whale.am28.uni-tuebingen.de/git/jgrewe/efish_tracking.git

2. Change into directory

cd efish_tracking

3. Install with pip

pip3 install -e . --user

The -e installs the package in an editable model that you do not need to reinstall whenever you pull upstream changes.

If you leave away the --user the package will be installed system-wide.

TrackingResults

Is a class that wraps around the *.h5 files written by DeepLabCut

ImageMarker

Class that allows for creating MarkerTasks to get specific positions in a video.