Added MA literature selection and grasshopper sketch SVGs.
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cite.bib
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cite.bib
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@article{clemens2011,
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author = "Jan Clemens, Olaf Kutzki; Bernd Ronacher; Susanne Schreiber; Sandra Wohlgemuth",
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journal = "PNAS",
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volume = "108",
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number = "33",
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year = "2011",
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DOI = "https://doi.org/10.1073/pnas.1104506108",
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@article{balakrishnan2001song,
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title={{Song pattern recognition in the grasshopper Chorthippus biguttulus: The mechanism of syllable onset and offset detection}},
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author={Balakrishnan, Rohini and von Helversen, Dagmar and von Helversen, Otto},
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journal={J Comp Physiol A},
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volume={187},
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pages={255--264},
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year={2001},
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}
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@article{bauer1987separate,
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title={Separate localization of sound recognizing and sound producing neural mechanisms in a grasshopper},
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author={Bauer, Maria and von Helversen, Otto},
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journal={J Comp Physiol A},
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volume={161},
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pages={95--101},
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year={1987},
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}
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@article{benda2008spike,
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title={Spike-frequency adaptation generates intensity invariance in a primary auditory interneuron},
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author={Benda, Jan and Hennig, R Matthias},
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journal={J Comp Neurosci},
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volume={24},
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pages={113--136},
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year={2008},
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}
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@article{bhavsar2017brain,
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title={Brain regions for sound processing and song release in a small grasshopper},
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author={Bhavsar, Mit Balvantray and Stumpner, Andreas and Heinrich, Ralf},
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journal={J Insect Physiol},
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volume={99},
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pages={15--24},
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year={2017},
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}
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@article{breckow1985mechanics,
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title={Mechanics of the transduction of sound in the tympanal organ of adults and larvae of locusts},
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author={Breckow, Joachim and Sippel, Martin},
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journal={J Comp Physiol A},
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volume={157},
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pages={619--629},
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year={1985},
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}
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@misc{cigliano2018orthoptera,
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title={{Orthoptera Species File. Version 5.0/5.0}},
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author={Cigliano, MM and Braun, H and Eades, DC and Otte, D},
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year={2018}
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}
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@article{clemens2013computational,
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title={Computational principles underlying the recognition of acoustic signals in insects},
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author={Clemens, Jan and Hennig, R Matthias},
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journal={J Comp Neurosci},
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volume={35},
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pages={75--85},
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year={2013},
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}
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@article{clemens2011efficient,
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title={Efficient transformation of an auditory population code in a small sensory system},
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author={Clemens, Jan and Kutzki, Olaf and Ronacher, Bernhard and Schreiber, Susanne and Wohlgemuth, Sandra},
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journal={PNAS},
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volume={108},
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pages={13812--13817},
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year={2011},
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}
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@article{clemens2013feature,
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title={Feature extraction and integration underlying perceptual decision making during courtship behavior},
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author={Clemens, Jan and Ronacher, Bernhard},
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journal={J Neurosci},
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volume={33},
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pages={12136--12145},
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year={2013},
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}
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@article{clemens2012nonlinear,
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title={Nonlinear computations underlying temporal and population sparseness in the auditory system of the grasshopper},
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author={Clemens, Jan and Wohlgemuth, Sandra and Ronacher, Bernhard},
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journal={J Neurosci},
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volume={32},
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pages={10053--10062},
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year={2012},
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}
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@article{clemens2010intensity,
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title={Intensity invariance properties of auditory neurons compared to the statistics of relevant natural signals in grasshoppers},
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author={Clemens, Jan and Weschke, Gerroth and Vogel, Astrid and Ronacher, Bernhard},
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journal={J Comp Physiol A},
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volume={196},
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pages={285--297},
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year={2010},
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}
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@article{creutzig2010timescale,
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title={Timescale-invariant pattern recognition by feedforward inhibition and parallel signal processing},
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author={Creutzig, Felix and Benda, Jan and Wohlgemuth, Sandra and Stumpner, Andreas and Ronacher, Bernhard and Herz, Andreas VM},
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journal={Neural Comput},
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volume={22},
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pages={1493--1510},
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year={2010},
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}
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@article{creutzig2009timescale,
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title={Timescale-invariant representation of acoustic communication signals by a bursting neuron},
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author={Creutzig, Felix and Wohlgemuth, Sandra and Stumpner, Andreas and Benda, Jan and Ronacher, Bernhard and Herz, Andreas VM},
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journal={J Neurosci},
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volume={29},
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pages={2575--2580},
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year={2009},
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}
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@article{fisch2012channel,
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title={Channel noise from both slow adaptation currents and fast currents is required to explain spike-response variability in a sensory neuron},
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author={Fisch, Karin and Schwalger, Tilo and Lindner, Benjamin and Herz, Andreas VM and Benda, Jan},
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journal={J Neurosci},
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volume={32},
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pages={17332--17344},
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year={2012},
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}
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@article{gollisch2002energy,
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title={Energy integration describes sound-intensity coding in an insect auditory system},
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author={Gollisch, Tim and Sch{\"u}tze, Hartmut and Benda, Jan and Herz, Andreas VM},
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journal={J Neurosci},
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volume={22},
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pages={10434--10448},
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year={2002},
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}
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@article{hennig2014time,
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title={Time and timing in the acoustic recognition system of crickets},
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author={Hennig, R Matthias and Heller, Klaus-Gerhard and Clemens, Jan},
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journal={Front Physiol},
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volume={5},
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pages={286},
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year={2014},
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}
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@article{hildebrandt2009origin,
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title={The origin of adaptation in the auditory pathway of locusts is specific to cell type and function},
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author={Hildebrandt, K Jannis and Benda, Jan and Hennig, R Matthias},
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journal={J Neurosci},
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volume={29},
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pages={2626--2636},
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year={2009},
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}
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@article{hildebrandt2015neural,
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title={A neural mechanism for time-window separation resolves ambiguity of adaptive coding},
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author={Hildebrandt, K Jannis and Ronacher, Bernhard and Hennig, R Matthias and Benda, Jan},
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journal={PLoS Biol},
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volume={13},
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pages={e1002096},
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year={2015},
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}
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@article{hoy1996tympanal,
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title={Tympanal hearing in insects},
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author={Hoy, Ronald R and Robert, Daniel},
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journal={Annu Rev Entomol},
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volume={41},
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pages={433--450},
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year={1996},
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}
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@article{lang2000acoustic,
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title={Acoustic communication distances of a gomphocerine grasshopper},
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author={Lang, Friederike},
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journal={Bioacoustics},
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volume={10},
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pages={233--258},
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year={2000},
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}
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@article{machens2001discrimination,
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title={Discrimination of behaviorally relevant signals by auditory receptor neurons},
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author={Machens, Christian K and Prinz, P and Stemmler, Martin B and Ronacher, Bernhard and Herz, Andreas VM},
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journal={Neurocomputing},
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volume={38--40},
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pages={263--268},
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year={2001},
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}
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@article{machens2001representation,
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title={Representation of acoustic communication signals by insect auditory receptor neurons},
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author={Machens, Christian K and Stemmler, Martin B and Prinz, Petra and Krahe, R{\"u}diger and Ronacher, Bernhard and Herz, Andreas VM},
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journal={J Neurosci},
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volume={21},
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pages={3215--3227},
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year={2001},
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}
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@article{malkin2014energy,
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title={Energy localization and frequency analysis in the locust ear},
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author={Malkin, Robert and McDonagh, Thomas R and Mhatre, Natasha and Scott, Thomas S and Robert, Daniel},
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journal={J R Soc Interface},
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volume={11},
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pages={20130857},
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year={2014},
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}
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@article{michelsen1971physiology,
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title={{The physiology of the locust ear: I. Frequency sensitivity of single cells in the isolated ear}},
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author={Michelsen, Axel},
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journal={Z vergl Physiologie},
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volume={71},
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pages={49--62},
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year={1971},
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}
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@article{michelsen1971frequency,
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title={{The physiology of the locust ear: II. Frequency discrimination based upon resonances in the tympanum}},
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author={Michelsen, Axel},
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journal={Z vergl Physiologie},
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volume={71},
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pages={63--101},
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year={1971},
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}
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@article{neuhofer2008evolutionarily,
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title={Evolutionarily conserved coding properties of auditory neurons across grasshopper species},
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author={Neuhofer, Daniela and Wohlgemuth, Sandra and Stumpner, Andreas and Ronacher, Bernhard},
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journal={Proc R Soc B},
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volume={275},
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pages={1965--1974},
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year={2008},
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}
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@article{rehbein1976auditory,
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title={Auditory neurons in the ventral cord of the locust: Morphological and functional properties},
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author={Rehbein, Hansgeorg},
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journal={J Comp Physiol A},
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volume={110},
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pages={233--250},
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year={1976},
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}
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@article{romer1985responses,
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title={Responses to model songs of auditory neurons in the thoracic ganglia and brain of the locust},
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author={R{\"o}mer, Heiner and Seikowski, Ulrich},
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journal={J Comp Physiol A},
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volume={156},
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pages={845--860},
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year={1985},
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}
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@article{roemschied2014cell,
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title={Cell-intrinsic mechanisms of temperature compensation in a grasshopper sensory receptor neuron},
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author={R{\"o}mschied, Frederic A and Eberhard, Monika JB and Schleimer, Jan-Hendrik and Ronacher, Bernhard and Schreiber, Susanne},
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journal={eLife},
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volume={3},
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pages={e02078},
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year={2014},
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}
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@phdthesis{romschied2016neural,
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title={Neural mechanisms of temperature compensation in an insect auditory system.},
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author={R{\"o}mschied, Frederic Alexander},
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school={Humboldt-Universit{\"a}t zu Berlin, Lebenswissenschaftliche Fakult{\"a}t},
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year={2016},
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}
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@article{ronacher1986routes,
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title={{Routes and stations in the processing of auditory directional information in the CNS of a grasshopper, as revealed by surgical experiments}},
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author={Ronacher, Bernhard and Helversen, Dagmar v and Helversen, Otto v},
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journal={J Comp Physiol A},
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volume={158},
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pages={363--374},
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year={1986},
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}
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@article{ronacher2015computational,
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title={Computational principles underlying recognition of acoustic signals in grasshoppers and crickets},
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author={Ronacher, Bernhard and Hennig, R Matthias and Clemens, Jan},
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journal={J Comp Physiol A},
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volume={201},
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pages={61--71},
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year={2015},
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}
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@article{sevastianov2023evolution,
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title={{Evolution of calling songs in the grasshopper subfamily Gomphocerinae (Orthoptera, Acrididae)}},
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author={Sevastianov, Nikita and Neretina, Tatiana and Vedenina, Varvara},
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journal={Zool Scr},
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volume={52},
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pages={154--175},
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year={2023},
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}
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@article{stumpner1994song,
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title={{Song production and song recognition in a group of sibling grasshopper species (Chorthippus dorsatus, Ch. dichrous and Ch. loratus: Orthoptera, Acrididae)}},
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author={Stumpner, Andreas and von Helversen, Otto},
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journal={Bioacoustics},
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volume={6},
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pages={1--23},
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year={1994},
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}
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@article{suga1960peripheral,
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title={Peripheral mechanism of hearing in locust},
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author={Suga, Nobuo},
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journal={Jpn J Physiol},
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volume={10},
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pages={533--546},
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year={1960},
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}
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@article{tarasova2021biguttulus,
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title={{Songs and morphology in three species of the Chorthippus biguttulus group (Orthoptera, Acrididae, Gomphocerinae) in Russia and adjacent countries}},
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author={Tarasova, Tatiana and Tishechkin, Dmitry and Vedenina, Varvara},
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journal={Zookeys},
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volume={1073},
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pages={21--53},
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year={2021},
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}
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@article{tarasova2021eurasius,
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title={{Songs and morphology in grasshoppers of the Stenobothrus eurasius group (Orthoptera: Acrdidae: Gomphocerinae) from Russia and adjacent countries: clarifying of taxonomic status}},
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author={Tarasova, Tatiana A and Sevastianov, Nikita S and Vedenina, Varvara Yu},
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journal={Zootaxa},
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volume={4965},
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pages={244--260},
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year={2021},
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}
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@article{tishechkin2016acoustic,
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title={Acoustic signals in insects: A reproductive barrier and a taxonomic character},
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author={Tishechkin, D Yu and Vedenina, V Yu},
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journal={Entomol Rev},
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volume={96},
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pages={1127--1164},
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year={2016},
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}
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@article{vedenina2014stable,
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title={{Stable and variable parameters in courtship songs of grasshoppers of the subfamily Gomphocerinae (Orthoptera, Acrididae)}},
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author={Vedenina, V Yu and Shestakov, LS},
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journal={Entomol Rev},
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volume={94},
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pages={1--20},
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year={2014},
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}
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@article{vedenina2003complex,
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title={Complex courtship in a bimodal grasshopper hybrid zone},
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author={Vedenina, V Yu and von Helversen, O},
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journal={Behav Ecol Sociobiol},
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volume={54},
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pages={44--54},
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year={2003},
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}
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@article{vedenina2011speciation,
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title={Speciation in gomphocerine grasshoppers: Molecular phylogeny versus bioacoustics and courtship behavior},
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author={Vedenina, Varvara Yu and Mugue, Nikolay},
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journal={J Orthoptera Res},
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volume={20},
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pages={109--125},
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year={2011},
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}
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@article{vedenina2013narrow,
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title={{A narrow hybrid zone between the grasshoppers Stenobothrus clavatus and Stenobothrus rubicundus (Orthoptera: Gomphocerinae): Female preferences for courtship songs}},
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author={Vedenina, Varvara Yu and F{\"a}hsing, Sylvia and Sradnick, Jan and Kl{\"o}pfel, Anja and Elsner, Norbert},
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journal={Biol J Linn Soc Lond},
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volume={108},
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pages={834--843},
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year={2013},
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}
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@article{von1984parallel,
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title={{Parallel processing in auditory pattern recognition and directional analysis by the grasshopper Chorthippus biguttulus L. (Acrididae)}},
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author={von Helversen, Dagmar},
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journal={J Comp Physiol A},
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volume={154},
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pages={837--846},
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year={1984},
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}
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@article{von1993absolute,
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title={{‘Absolute steepness’ of ramps as an essential cue for auditory pattern recognition by a grasshopper (Orthoptera; Acrididae; Chorthippus biguttulus L.)}},
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author={von Helversen, Dagmar},
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journal={J Comp Physiol A},
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volume={172},
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pages={633--639},
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year={1993},
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}
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@article{von2004acoustic,
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title={{Acoustic communication in a duetting grasshopper: Receiver response variability, male strategies and signal design}},
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author={von Helversen, Dagmar and Balakrishnan, Rohini and von Helversen, Otto},
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journal={Anim Behav},
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volume={68},
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pages={131--144},
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year={2004},
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}
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@article{von1977stridulatory,
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title={The stridulatory movements of acridid grasshoppers recorded with an opto-electronic device},
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author={von Helversen, Otto and Elsner, Norbert},
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journal={J Comp Physiol A},
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volume={122},
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pages={53--64},
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year={1977},
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}
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@article{windmill2008time,
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title={Time-resolved tympanal mechanics of the locust},
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author={Windmill, JFC and Bockenhauer, S and Robert, D},
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journal={J R Soc Interface},
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volume={5},
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pages={1435--1443},
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year={2008},
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}
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\relax
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\abx@aux@refcontext{nyt/global//global/global}
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\@writefile{toc}{\contentsline {section}{\numberline {1}The sensory world of a grasshopper}{1}{}\protected@file@percent }
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\abx@aux@cite{0}{clemens2011}
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\@writefile{toc}{\contentsline {section}{\numberline {1}Exploring a grashopper's sensory world}{1}{}\protected@file@percent }
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\abx@aux@cite{0}{clemens2013computational}
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\abx@aux@cite{0}{clemens2013feature}
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\abx@aux@segm{0}{0}{clemens2013feature}
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\abx@aux@cite{0}{ronacher2015computational}
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\abx@aux@page{1}{2}
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\abx@aux@page{2}{2}
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\abx@aux@page{3}{2}
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\@writefile{toc}{\contentsline {section}{\numberline {2}Developing a functional model of\\the grasshopper auditory pathway}{2}{}\protected@file@percent }
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\@writefile{toc}{\contentsline {subsection}{\numberline {2.1}Population-driven signal pre-processing}{2}{}\protected@file@percent }
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\abx@aux@page{1}{2}
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\newlabel{eq:bandpass}{{1}{2}{}{}{}}
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\newlabel{eq:env}{{2}{2}{}{}{}}
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170
main.bbl
170
main.bbl
@ -19,33 +19,165 @@
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|
||||
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|
||||
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||||
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44
main.tex
44
main.tex
@ -43,7 +43,7 @@ style=authoryear,
|
||||
\newcommand{\pc}{p(c_i,\,T)} % Probability density (general interval)
|
||||
\newcommand{\pclp}{p(c_i,\,\tlp)} % Probability density (lowpass interval)
|
||||
|
||||
\section{The sensory world of a grasshopper}
|
||||
\section{Exploring a grashopper's sensory world}
|
||||
|
||||
Strong dependence on acoustic signals for ranged communication\\
|
||||
- Diverse species-specific sound repertoires and production mechanisms\\
|
||||
@ -87,6 +87,19 @@ How can a human observer conceive a grasshopper's auditory percepts?\\
|
||||
- How to integrate the available knowledge on anatomy, physiology, ethology?\\
|
||||
$\rightarrow$ Abstract, simplify, formalize $\rightarrow$ Functional model framework
|
||||
|
||||
\textbf{Precursor work for model construction (special thanks to authors):}
|
||||
|
||||
Linear-nonlinear modelling of behavioral responses to artificial songs\\
|
||||
- Feature expansion as implemented in our model: Major contribution!\\
|
||||
- Bank of linear filters, nonlinearity, temporal integration, feature weighting\\
|
||||
$\rightarrow$ \cite{clemens2013computational} (crickets)\\
|
||||
$\rightarrow$ \cite{clemens2013feature} (grasshoppers)\\
|
||||
$\rightarrow$ \cite{ronacher2015computational}\\
|
||||
\textbf{Own advancements/key differences}:\\
|
||||
1) Used boxcar functions as artificial "songs" (focus on few key parameters)\\
|
||||
$\rightarrow$ Now actual, variable songs (as naturalistic as possible)\\
|
||||
2) Fitted filters to behavioral data\\
|
||||
$\rightarrow$ More general, simpler, unfitted formalized Gabor filter bank
|
||||
|
||||
\section{Developing a functional model of\\the grasshopper auditory pathway}
|
||||
|
||||
@ -96,7 +109,7 @@ $\rightarrow$ Abstract, simplify, formalize $\rightarrow$ Functional model frame
|
||||
"Pre-split portion" of the auditory pathway:\\
|
||||
Tympanal membrane $\rightarrow$ Receptor neurons $\rightarrow$ Local interneurons
|
||||
|
||||
Similar response/filter properties within receptor/interneuron populations (\cite{clemens2011})\\
|
||||
Similar response/filter properties within receptor/interneuron populations (\cite{clemens2011efficient})\\
|
||||
$\rightarrow$ One population-wide response trace per stage (no "single-cell resolution")
|
||||
|
||||
\textbf{Stage-specific processing steps and functional approximations:}
|
||||
@ -140,7 +153,7 @@ $\rightarrow$ Highpass filter 10 Hz
|
||||
"Post-split portion" of the auditory pathway:\\
|
||||
Ascending neurons (AN) $\rightarrow$ Central brain neurons
|
||||
|
||||
Diverse response/filter properties within AN population (\cite{clemens2011})\\
|
||||
Diverse response/filter properties within AN population (\cite{clemens2011efficient})\\
|
||||
- Pathway splitting into several parallel branches\\
|
||||
- Expansion into a decorrelated higher-dimensional sound representation\\
|
||||
$\rightarrow$ Individual neuron-specific response traces from this stage onwards
|
||||
@ -327,18 +340,29 @@ duty cycle-encoding quantity, mediated by threshold function $\nl$
|
||||
on the magnitude of the derivative of $c_i(t)$ in temporal proximity to time
|
||||
points at which $c_i(t)$ crosses threshold value $\thr$\\
|
||||
$\rightarrow$ The steeper the slope of $c_i(t)$, the less $T_1$ changes with scale variations\\
|
||||
$\rightarrow$ Extreme amplitudes of $c_i(t)$ (peaks/troughs)
|
||||
$\rightarrow$ If $T_1$ is invariant to scale variation in $c_i(t)$, then so is $\feat(t)$
|
||||
|
||||
$\rightarrow$ Only amplitudes of \\
|
||||
$\rightarrow$ Absolute amplitudes of peaks/troughs of $c_i(t)$ \\
|
||||
$\rightarrow$ Acuity of peaks/troughs in $c_i(t)$ matters, not their absolute amplitude
|
||||
|
||||
- From graded stimulus to categorical behavioral decision:\\
|
||||
- Suggests a relatively simple rule for optimal choice of threshold value $\thr$:\\
|
||||
$\rightarrow$ Find amplitude $c_i$ that maximizes absolute derivative of $c_i(t)$ over time\\
|
||||
$\rightarrow$ Optimal with respect to intensity invariance of $\feat(t)$, not necessarily for
|
||||
other criteria such as song-noise separation or diversity between features
|
||||
|
||||
- Nonlinear operations can be used to detach representations from graded physical
|
||||
stimulus (to fasciliate categorical behavioral decision-making?):\\
|
||||
1) Capture sufficiently precise amplitude information: $\env(t)$, $\adapt(t)$\\
|
||||
$\rightarrow$ Closely following the AM of the acoustic stimulus\\
|
||||
2) Quantify relevant stimulus properties on a graded scale: $c_i(t)$\\
|
||||
$\rightarrow$ More decorrelated representation, compared to prior stages\\
|
||||
3) Nonlinearity: Distinguish between "relevant vs irrelevant" values: $\bi(t)$\\
|
||||
$\rightarrow$ Trading a graded scale for two or more categorical states\\
|
||||
4) Represent stimulus properties under relevance constraint: $\feat(t)$\\
|
||||
$\rightarrow$ Graded again but highly decorrelated from the acoustic stimulus\\
|
||||
5) Categorical behavioral decision-making requires further nonlinearities\\
|
||||
$\rightarrow$ Parameters of a behavioral response may be graded (e.g. approach speed),
|
||||
initiation of one behavior over another is categorical (e.g. approach/stay)
|
||||
|
||||
\section{Discriminating species-specific song\\patterns in feature space}
|
||||
|
||||
|
||||
\section{Conclusions \& outlook}
|
||||
|
||||
\end{document}
|
||||
Loading…
Reference in New Issue
Block a user