Commit Graph

49 Commits

Author SHA1 Message Date
b43aabba6f [frontend] a lot of docstrings 2020-07-31 18:04:40 +02:00
24350c18ac [cmd] profiling 2020-07-31 18:03:09 +02:00
dd8bff586d [util] split mtag feature to yaml routine 2020-07-31 18:02:31 +02:00
548dca769e [cmd] add a data import command 2020-07-31 17:59:50 +02:00
d968fdac8c [frontend] add test flag to find methods 2020-07-28 15:33:01 +02:00
1832bae72c backend better output 2020-07-28 15:31:36 +02:00
f4d669f1d6 [dataimport] minor optimizations 2020-07-28 15:30:37 +02:00
4326148b3f fix output 2020-07-28 14:29:57 +02:00
b01270bb9b data import command line tool 2020-07-28 14:29:40 +02:00
fce7f67fa2 [frontend] improve finding, docstrings 2020-07-28 13:36:10 +02:00
76107b3074 [backend/database] fix imports, remove single quotes from settings 2020-07-28 13:34:59 +02:00
fec628034c [backend/util] progress bar, some docstrings 2020-07-28 13:33:29 +02:00
5ba629c1ae [frontend] dataset docstrings, improved searching 2020-07-28 13:32:17 +02:00
0fcddd3d51 [docs] adds a stolen shell script for creating the documentation ...
stolen from https://github.com/bendalab/thunderfish/blob/master/build-docs.sh
2020-07-27 11:11:40 +02:00
b4d03325de docstrings and added Dataset totalcount function 2020-07-27 09:50:33 +02:00
ab10f715d4 add mkdocs config 2020-07-27 09:49:24 +02:00
914a861b26 restructuring 2020-07-22 22:43:11 +02:00
14bed0cc6a rearraning things 2020-07-22 13:35:12 +02:00
1874985f56 moving stuff around 2020-07-22 13:09:32 +02:00
a6a478c5d1 docstrings, renaming etc 2020-07-22 10:18:20 +02:00
b86c1b2653 fixes and docstring stubs 2020-07-22 10:17:46 +02:00
537162be00 tiny changes 2020-07-22 10:16:52 +02:00
5db8c01ed7 [__init__] better package imports 2020-07-22 10:15:35 +02:00
e0cd2a0538 [reproclasses] new FileStimulusData class 2019-11-18 16:52:01 +01:00
1a1dabf955 [reproclasses/baseline] add function to get the raw membrane voltage 2019-10-18 16:39:07 +02:00
ade9b62c54 Merge branch 'master' of https://whale.am28.uni-tuebingen.de/git/jgrewe/fishBook 2019-10-09 11:43:55 +02:00
3db309b6f1 [fishbook/dataset] fix constructor when passing the dataset_id 2019-10-09 11:42:07 +02:00
b009cf673a [reproclasses/FICurve] add documentation 2019-10-09 11:41:04 +02:00
2c4f3afa56 [reproclasses/FICurve] buffer spike times when reading from nix ...
fix spike indices during rate calculation
2019-10-09 11:38:58 +02:00
fe2457d85f [reproclasses/FICurve] fixed time alignment of spikes, create time arrays 2019-10-09 11:38:05 +02:00
ecdd29da79 [reproclasses, FIData] reading data from old-style files works 2019-10-09 10:01:59 +02:00
a77feab830 datetime patch 2019-10-08 11:47:01 +02:00
9b38188812 [reproclasses] docstrings 2019-10-07 17:21:27 +02:00
25c296be6f [FiData] add method to fit fi curves 2019-10-07 15:00:18 +02:00
7ab965fe37 [reproclasses] new Boltzmann fit class 2019-10-07 14:55:13 +02:00
8d253c9c7a [reproclasses] new FI-Curve class, reading from nix works 2019-10-02 18:10:47 +02:00
c03f84c2ee [fishbook] additional functions for Stimulus class 2019-10-02 18:10:01 +02:00
d21c75cc7f [fishbook] add _tuple property that returns a copy of the db tuple 2019-10-02 18:09:37 +02:00
77c0460ca9 [Cell] return all datasets pointing to itself 2019-10-01 16:58:54 +02:00
0f46fa1431 [BaselineData] fix return value of circstd 2019-10-01 08:39:07 +02:00
4f2a114c9e many new function on BaselineData class 2019-09-24 21:44:49 +02:00
98c23554ce lots of changes 2019-09-21 11:15:41 +02:00
0453253bf3 add quality to find_repros 2019-09-19 11:09:50 +02:00
d27c02614c repro can find by celltype, species and name correctly 2019-09-19 10:35:49 +02:00
d918373564 baseline data should now work with frontend classes 2019-09-18 18:14:06 +02:00
c4bc3e064a fix off-by-one error in progress message 2019-09-18 18:13:25 +02:00
d542641f7d improve feedback upon unknown or ambiguous ids 2019-09-18 18:06:34 +02:00
6a8c800b0b package related stuff 2019-09-18 17:46:02 +02:00
c74e54e1ee make it a package 2019-09-18 17:13:49 +02:00