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[backend/database] fix imports, remove single quotes from settings

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Jan Grewe 2020-07-28 13:34:59 +02:00
parent 885d952e43
commit 76107b3074
1 changed files with 6 additions and 6 deletions
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12
fishbook/backend/database.py
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@ -3,9 +3,9 @@ import datajoint as dj
import nixio as nix
import os
import glob
from .util import read_info_file, read_dataset_info, read_stimuli_file
from .util import find_key_recursive, deep_get, find_mtags_for_tag
from .util import mtag_settings_to_yaml, nix_metadata_to_yaml
from fishbook.backend.util import read_info_file, read_dataset_info, read_stimuli_file
from fishbook.backend.util import find_key_recursive, deep_get, find_mtags_for_tag
from fishbook.backend.util import mtag_settings_to_yaml, nix_metadata_to_yaml
import uuid
import yaml
@ -454,7 +454,7 @@ def scan_folder_for_repros(dataset):
rp["repro_id"] = rp["repro_name"] + str(repro_counts[rp["repro_name"]])
rp["start"] = 0.
rp["duration"] = 0.
rp["settings"] = yaml.dump(rs)
rp["settings"] = yaml.dump(rs).replace("'", "")
Repros.insert1(rp, skip_duplicates=True)
# import stimuli
@ -484,7 +484,7 @@ def scan_folder_for_repros(dataset):
stim["start_time"] = stim_start
stim["start_index"] = s
stim["duration"] = stim_duration
stim["settings"] = yaml.dump(rs)
stim["settings"] = yaml.dump(rs).replace("'", "")
stim["mtag_id"] = ""
stim["stimulus_name"] = ""
stim.update(repro)
@ -528,6 +528,6 @@ if __name__ == "__main__":
# data_dir = "../high_freq_chirps/data"
# drop_tables()
# datasets = glob.glob("/Users/jan/zwischenlager/2012-*")2010-06-21-ac/info.dat
datasets = glob.glob(os.path.join(data_dir, '/data/apteronotus/2019-10*'))
datasets = glob.glob(os.path.join(data_dir, '/data/apteronotus/2019-10-2*'))
populate(datasets, update=False)