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updated regimes figure

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Jan Benda 2025-05-16 09:22:34 +02:00
parent 9510b8bbe5
commit 273b7a04ae
3 changed files with 257 additions and 18 deletions
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data/cells/2013-01-08-aa-invivo-1-contrastpeaks.csv Normal file
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contrast/%,f1/Hz,f2/Hz,f1+f2/Hz,f2-f1/Hz
0.0,443.949,14910.2,3508.46,1874.87
0.1,452.806,15246.7,3540.24,1940.44
0.2,544.882,16645.1,3485.35,1912.72
0.3,682.7,18324,3638.24,1899.45
0.4,931.933,21777.1,3476.33,1901.9
0.5,1319.9,26419.3,3603.34,1895.2
0.6,1677.17,30113.2,3665.13,1903.58
0.7,2051.77,37017.5,3581.3,1952.11
0.8,2600.35,45354.6,3528.9,1932.91
0.9,3179.39,51408.8,3586.04,1955.77
1.0,3793.06,60046.4,3601.14,2021.38
1.1,4560.06,69456.6,3659.88,1950.5
1.2,5302.08,77393.3,3798.62,1954.91
1.3,6057.7,89662,3838.78,2022.77
1.4,6953.86,101945,4239.47,2093.94
1.5,8036.16,119050,4385.71,2137.91
1.6,9050.76,127272,4817.12,2125.21
1.7,10056.1,144998,4976.52,2219.78
1.8,11257.6,155870,5452.2,2266.68
1.9,12394,175322,5411.3,2494.43
2.0,13694.5,190274,6009.05,2716.64
2.1,15194.4,202697,6881.44,2725.46
2.2,16473.9,219269,7550.98,2874.82
2.3,18131.1,240023,8429.76,3219.07
2.4,19640,250636,9408.26,3396.35
2.5,21065.9,274181,10328.6,3897.92
2.6,22686.6,293049,11103.3,3901.32
2.7,24053.4,312801,12373.8,4192.14
2.8,25878.3,328418,13231.2,4699.77
2.9,27746.2,350318,14787.7,5147.72
3.0,29654.9,366179,15110.4,5370.47
3.1,31801,390730,17722.5,5969.82
3.2,33077.6,406406,19629.8,6332.34
3.3,35290.4,431837,21897.7,6686.9
3.4,37262.7,451934,22780.7,7177.93
3.5,39426.2,468724,25578.5,7763.61
3.6,41251.2,496171,27566.7,8252.81
3.7,43538.5,512614,30030.8,8710.28
3.8,45977.5,536852,32778.7,9579.56
3.9,47802.2,551778,35418.6,10304.5
4.0,50303.9,576449,37937,10937.7
4.1,52556.7,591165,40125.9,10994.5
4.2,54841.1,609369,42610.9,11711
4.3,57061.6,630749,45146.3,12554.9
4.4,59605,661253,49741.3,13176.4
4.5,62300.8,675542,53359.6,13821.5
4.6,64376.7,694640,55907.6,14282.3
4.7,66649.1,715194,58066.9,15303.1
4.8,69837.7,733166,62037.4,16068
4.9,72221.9,756223,67006.4,16904.1
5.0,75591.3,771586,69242.1,16966.2
5.1,77824.1,791123,73400.7,18082.1
5.2,80207.6,818047,79116.1,19107.5
5.3,83177.5,832371,81536.3,19268
5.4,85704.4,842162,85368.6,20081.5
5.5,89069,861376,87832.8,20588.7
5.6,91662,884650,94134.7,21494.2
5.7,94680.7,894889,97977.7,21838.4
5.8,97921.5,904816,101913,22191.6
5.9,100948,931136,107127,23174.5
6.0,103041,942873,110671,23834
6.1,107384,960488,114345,24534.3
6.2,110347,970176,118877,24613.3
6.3,113582,981384,122701,25342.6
6.4,116857,1.00145e+06,127355,25972.4
6.5,120414,1.01405e+06,131264,26427.5
6.6,123657,1.02774e+06,135772,26947.5
6.7,126447,1.04146e+06,139290,27661.5
6.8,130079,1.05614e+06,145632,28130
6.9,133465,1.07134e+06,149271,27757.2
7.0,137953,1.07971e+06,154455,27512.5
7.1,141411,1.08797e+06,157678,28119.4
7.2,144977,1.10694e+06,161216,28287.1
7.3,148118,1.11439e+06,163634,28896
7.4,152104,1.13169e+06,168685,28975.5
7.5,156098,1.14385e+06,172825,29136.5
7.6,159822,1.14756e+06,178335,29559.4
7.7,164181,1.15736e+06,179959,29123.3
7.8,168040,1.16624e+06,182076,28918.7
7.9,172400,1.18103e+06,186428,29819.6
8.0,176626,1.18451e+06,188667,29197.7
8.1,181279,1.19173e+06,193500,28803.5
8.2,184634,1.21214e+06,198357,30139.4
8.3,190200,1.21182e+06,198934,29435.5
8.4,194296,1.22856e+06,203986,30059.3
8.5,198112,1.23816e+06,204816,29193.9
8.6,203342,1.24264e+06,210840,29324
8.7,209082,1.25161e+06,210281,29658
8.8,212712,1.26118e+06,215732,29649.2
8.9,216743,1.26224e+06,217129,29925.7
9.0,221897,1.27861e+06,220978,30459.9
9.1,227242,1.28384e+06,219459,30176.5
9.2,231885,1.29032e+06,224311,30639
9.3,235807,1.30028e+06,226280,31525.1
9.4,242623,1.30407e+06,226463,31686.9
9.5,247678,1.30729e+06,228923,32456.5
9.6,253102,1.32134e+06,231688,32084.6
9.7,258516,1.3264e+06,231052,32475.5
9.8,264602,1.33153e+06,233155,33147
9.9,269442,1.33847e+06,232817,34490
10.1,275414,1.34956e+06,235268,34819.2
10.2,282815,1.35012e+06,233680,35683.7
10.3,286235,1.35827e+06,238995,36278.6
10.4,292763,1.37063e+06,237883,37956.8
10.5,298276,1.38364e+06,239149,40137.7
10.6,305261,1.38599e+06,241933,40634.2
10.7,310836,1.39169e+06,242297,41365.2
10.8,316918,1.40115e+06,242502,43831.3
10.9,323955,1.41268e+06,245134,44994.7
11.0,330517,1.41557e+06,243202,45975.7
11.1,336366,1.42822e+06,245586,49371.1
11.2,342493,1.43178e+06,245122,49635.5
11.3,350228,1.44189e+06,241073,52991.5
11.4,356391,1.45024e+06,245472,54352.2
11.5,362308,1.45751e+06,242601,57560.2
11.6,370326,1.46238e+06,242903,59954.7
11.7,378145,1.47136e+06,244009,62707.7
11.8,384430,1.47565e+06,247069,65172.2
11.9,390731,1.48948e+06,245279,68672.9
12.0,398343,1.49927e+06,244648,72524
12.1,404640,1.50622e+06,245258,74504.3
12.2,412943,1.51634e+06,246579,79453.6
12.3,420410,1.52766e+06,244759,83509.2
12.4,426579,1.53338e+06,246532,86244.3
12.5,433949,1.54249e+06,244684,90243
12.6,441362,1.557e+06,245121,95798.5
12.7,449260,1.56317e+06,244225,99349.7
12.8,455866,1.57281e+06,244569,103224
12.9,465165,1.58515e+06,245035,108078
13.0,473881,1.59317e+06,245585,112656
13.1,477951,1.60776e+06,247639,116865
13.2,485697,1.61504e+06,247766,120404
13.3,495065,1.62701e+06,246306,126477
13.4,503346,1.6334e+06,244923,133331
13.5,510810,1.6479e+06,247263,138423
13.6,519136,1.65853e+06,246636,143831
13.7,527044,1.66855e+06,247326,149587
13.8,534907,1.67922e+06,247929,155337
13.9,543905,1.68378e+06,247629,159740
14.0,551637,1.70402e+06,249758,167789
14.1,559545,1.71448e+06,250561,172134
14.2,565747,1.7241e+06,251257,179693
14.3,576568,1.7371e+06,250144,186764
14.4,582864,1.75042e+06,254045,191566
14.5,592815,1.76097e+06,254018,197652
14.6,600921,1.77373e+06,251636,206065
14.7,608614,1.78306e+06,252549,212579
14.8,617621,1.79495e+06,252807,219745
14.9,625915,1.80945e+06,255435,226765
15.0,633795,1.82008e+06,256247,232830
15.1,641274,1.83368e+06,257262,239334
15.2,651776,1.84672e+06,257499,248376
15.3,659979,1.85907e+06,259700,252787
15.4,668210,1.87029e+06,259974,263609
15.5,676716,1.88244e+06,260989,269961
15.6,686524,1.89579e+06,264744,278111
15.7,693030,1.9076e+06,264596,286325
15.8,703286,1.91856e+06,266108,293875
15.9,710356,1.9327e+06,267830,301787
16.0,720078,1.94702e+06,269847,308048
16.1,729912,1.95738e+06,270938,318588
16.2,736469,1.97206e+06,272360,325156
16.3,746812,1.98181e+06,276345,331016
16.4,753788,1.99916e+06,277476,340580
16.5,762482,2.0105e+06,278432,351356
16.6,770243,2.02553e+06,281632,357980
16.7,782091,2.03748e+06,282029,367124
16.8,790682,2.05258e+06,284762,374996
16.9,799104,2.06487e+06,288886,385716
17.0,807696,2.07526e+06,291629,392316
17.1,816360,2.08766e+06,293455,400056
17.2,823582,2.10123e+06,294600,410871
17.3,833400,2.11464e+06,296546,420457
17.4,843474,2.1217e+06,298297,427367
17.5,851916,2.13939e+06,301756,438379
17.6,860716,2.15484e+06,304479,445897
17.7,868406,2.16772e+06,308372,456795
17.8,879438,2.17989e+06,309082,464561
17.9,888231,2.19557e+06,312804,475801
18.0,897437,2.20749e+06,315443,486268
18.1,906100,2.21889e+06,317964,492645
18.2,914157,2.23204e+06,320215,503433
18.3,923485,2.24481e+06,324801,512714
18.4,933308,2.25814e+06,328911,522824
18.5,942521,2.27501e+06,332008,533261
18.6,950541,2.28515e+06,334427,543097
18.7,959812,2.29679e+06,337361,550246
18.8,968856,2.31509e+06,341532,563251
18.9,978769,2.32288e+06,343096,574810
19.0,988305,2.33779e+06,347046,583050
19.1,996233,2.35491e+06,350982,589428
19.2,1.00677e+06,2.3664e+06,352951,603616
19.3,1.01404e+06,2.38128e+06,357384,614489
19.4,1.02433e+06,2.38848e+06,363376,622459
19.5,1.03547e+06,2.40559e+06,365173,635075
19.6,1.04181e+06,2.41607e+06,367379,645082
19.7,1.05217e+06,2.42564e+06,372387,658039
19.8,1.06182e+06,2.44668e+06,378595,666422
19.9,1.07065e+06,2.462e+06,378154,679152
20.0,1.07888e+06,2.46916e+06,383906,691408
1 contrast/% f1/Hz f2/Hz f1+f2/Hz f2-f1/Hz
2 0.0 443.949 14910.2 3508.46 1874.87
3 0.1 452.806 15246.7 3540.24 1940.44
4 0.2 544.882 16645.1 3485.35 1912.72
5 0.3 682.7 18324 3638.24 1899.45
6 0.4 931.933 21777.1 3476.33 1901.9
7 0.5 1319.9 26419.3 3603.34 1895.2
8 0.6 1677.17 30113.2 3665.13 1903.58
9 0.7 2051.77 37017.5 3581.3 1952.11
10 0.8 2600.35 45354.6 3528.9 1932.91
11 0.9 3179.39 51408.8 3586.04 1955.77
12 1.0 3793.06 60046.4 3601.14 2021.38
13 1.1 4560.06 69456.6 3659.88 1950.5
14 1.2 5302.08 77393.3 3798.62 1954.91
15 1.3 6057.7 89662 3838.78 2022.77
16 1.4 6953.86 101945 4239.47 2093.94
17 1.5 8036.16 119050 4385.71 2137.91
18 1.6 9050.76 127272 4817.12 2125.21
19 1.7 10056.1 144998 4976.52 2219.78
20 1.8 11257.6 155870 5452.2 2266.68
21 1.9 12394 175322 5411.3 2494.43
22 2.0 13694.5 190274 6009.05 2716.64
23 2.1 15194.4 202697 6881.44 2725.46
24 2.2 16473.9 219269 7550.98 2874.82
25 2.3 18131.1 240023 8429.76 3219.07
26 2.4 19640 250636 9408.26 3396.35
27 2.5 21065.9 274181 10328.6 3897.92
28 2.6 22686.6 293049 11103.3 3901.32
29 2.7 24053.4 312801 12373.8 4192.14
30 2.8 25878.3 328418 13231.2 4699.77
31 2.9 27746.2 350318 14787.7 5147.72
32 3.0 29654.9 366179 15110.4 5370.47
33 3.1 31801 390730 17722.5 5969.82
34 3.2 33077.6 406406 19629.8 6332.34
35 3.3 35290.4 431837 21897.7 6686.9
36 3.4 37262.7 451934 22780.7 7177.93
37 3.5 39426.2 468724 25578.5 7763.61
38 3.6 41251.2 496171 27566.7 8252.81
39 3.7 43538.5 512614 30030.8 8710.28
40 3.8 45977.5 536852 32778.7 9579.56
41 3.9 47802.2 551778 35418.6 10304.5
42 4.0 50303.9 576449 37937 10937.7
43 4.1 52556.7 591165 40125.9 10994.5
44 4.2 54841.1 609369 42610.9 11711
45 4.3 57061.6 630749 45146.3 12554.9
46 4.4 59605 661253 49741.3 13176.4
47 4.5 62300.8 675542 53359.6 13821.5
48 4.6 64376.7 694640 55907.6 14282.3
49 4.7 66649.1 715194 58066.9 15303.1
50 4.8 69837.7 733166 62037.4 16068
51 4.9 72221.9 756223 67006.4 16904.1
52 5.0 75591.3 771586 69242.1 16966.2
53 5.1 77824.1 791123 73400.7 18082.1
54 5.2 80207.6 818047 79116.1 19107.5
55 5.3 83177.5 832371 81536.3 19268
56 5.4 85704.4 842162 85368.6 20081.5
57 5.5 89069 861376 87832.8 20588.7
58 5.6 91662 884650 94134.7 21494.2
59 5.7 94680.7 894889 97977.7 21838.4
60 5.8 97921.5 904816 101913 22191.6
61 5.9 100948 931136 107127 23174.5
62 6.0 103041 942873 110671 23834
63 6.1 107384 960488 114345 24534.3
64 6.2 110347 970176 118877 24613.3
65 6.3 113582 981384 122701 25342.6
66 6.4 116857 1.00145e+06 127355 25972.4
67 6.5 120414 1.01405e+06 131264 26427.5
68 6.6 123657 1.02774e+06 135772 26947.5
69 6.7 126447 1.04146e+06 139290 27661.5
70 6.8 130079 1.05614e+06 145632 28130
71 6.9 133465 1.07134e+06 149271 27757.2
72 7.0 137953 1.07971e+06 154455 27512.5
73 7.1 141411 1.08797e+06 157678 28119.4
74 7.2 144977 1.10694e+06 161216 28287.1
75 7.3 148118 1.11439e+06 163634 28896
76 7.4 152104 1.13169e+06 168685 28975.5
77 7.5 156098 1.14385e+06 172825 29136.5
78 7.6 159822 1.14756e+06 178335 29559.4
79 7.7 164181 1.15736e+06 179959 29123.3
80 7.8 168040 1.16624e+06 182076 28918.7
81 7.9 172400 1.18103e+06 186428 29819.6
82 8.0 176626 1.18451e+06 188667 29197.7
83 8.1 181279 1.19173e+06 193500 28803.5
84 8.2 184634 1.21214e+06 198357 30139.4
85 8.3 190200 1.21182e+06 198934 29435.5
86 8.4 194296 1.22856e+06 203986 30059.3
87 8.5 198112 1.23816e+06 204816 29193.9
88 8.6 203342 1.24264e+06 210840 29324
89 8.7 209082 1.25161e+06 210281 29658
90 8.8 212712 1.26118e+06 215732 29649.2
91 8.9 216743 1.26224e+06 217129 29925.7
92 9.0 221897 1.27861e+06 220978 30459.9
93 9.1 227242 1.28384e+06 219459 30176.5
94 9.2 231885 1.29032e+06 224311 30639
95 9.3 235807 1.30028e+06 226280 31525.1
96 9.4 242623 1.30407e+06 226463 31686.9
97 9.5 247678 1.30729e+06 228923 32456.5
98 9.6 253102 1.32134e+06 231688 32084.6
99 9.7 258516 1.3264e+06 231052 32475.5
100 9.8 264602 1.33153e+06 233155 33147
101 9.9 269442 1.33847e+06 232817 34490
102 10.1 275414 1.34956e+06 235268 34819.2
103 10.2 282815 1.35012e+06 233680 35683.7
104 10.3 286235 1.35827e+06 238995 36278.6
105 10.4 292763 1.37063e+06 237883 37956.8
106 10.5 298276 1.38364e+06 239149 40137.7
107 10.6 305261 1.38599e+06 241933 40634.2
108 10.7 310836 1.39169e+06 242297 41365.2
109 10.8 316918 1.40115e+06 242502 43831.3
110 10.9 323955 1.41268e+06 245134 44994.7
111 11.0 330517 1.41557e+06 243202 45975.7
112 11.1 336366 1.42822e+06 245586 49371.1
113 11.2 342493 1.43178e+06 245122 49635.5
114 11.3 350228 1.44189e+06 241073 52991.5
115 11.4 356391 1.45024e+06 245472 54352.2
116 11.5 362308 1.45751e+06 242601 57560.2
117 11.6 370326 1.46238e+06 242903 59954.7
118 11.7 378145 1.47136e+06 244009 62707.7
119 11.8 384430 1.47565e+06 247069 65172.2
120 11.9 390731 1.48948e+06 245279 68672.9
121 12.0 398343 1.49927e+06 244648 72524
122 12.1 404640 1.50622e+06 245258 74504.3
123 12.2 412943 1.51634e+06 246579 79453.6
124 12.3 420410 1.52766e+06 244759 83509.2
125 12.4 426579 1.53338e+06 246532 86244.3
126 12.5 433949 1.54249e+06 244684 90243
127 12.6 441362 1.557e+06 245121 95798.5
128 12.7 449260 1.56317e+06 244225 99349.7
129 12.8 455866 1.57281e+06 244569 103224
130 12.9 465165 1.58515e+06 245035 108078
131 13.0 473881 1.59317e+06 245585 112656
132 13.1 477951 1.60776e+06 247639 116865
133 13.2 485697 1.61504e+06 247766 120404
134 13.3 495065 1.62701e+06 246306 126477
135 13.4 503346 1.6334e+06 244923 133331
136 13.5 510810 1.6479e+06 247263 138423
137 13.6 519136 1.65853e+06 246636 143831
138 13.7 527044 1.66855e+06 247326 149587
139 13.8 534907 1.67922e+06 247929 155337
140 13.9 543905 1.68378e+06 247629 159740
141 14.0 551637 1.70402e+06 249758 167789
142 14.1 559545 1.71448e+06 250561 172134
143 14.2 565747 1.7241e+06 251257 179693
144 14.3 576568 1.7371e+06 250144 186764
145 14.4 582864 1.75042e+06 254045 191566
146 14.5 592815 1.76097e+06 254018 197652
147 14.6 600921 1.77373e+06 251636 206065
148 14.7 608614 1.78306e+06 252549 212579
149 14.8 617621 1.79495e+06 252807 219745
150 14.9 625915 1.80945e+06 255435 226765
151 15.0 633795 1.82008e+06 256247 232830
152 15.1 641274 1.83368e+06 257262 239334
153 15.2 651776 1.84672e+06 257499 248376
154 15.3 659979 1.85907e+06 259700 252787
155 15.4 668210 1.87029e+06 259974 263609
156 15.5 676716 1.88244e+06 260989 269961
157 15.6 686524 1.89579e+06 264744 278111
158 15.7 693030 1.9076e+06 264596 286325
159 15.8 703286 1.91856e+06 266108 293875
160 15.9 710356 1.9327e+06 267830 301787
161 16.0 720078 1.94702e+06 269847 308048
162 16.1 729912 1.95738e+06 270938 318588
163 16.2 736469 1.97206e+06 272360 325156
164 16.3 746812 1.98181e+06 276345 331016
165 16.4 753788 1.99916e+06 277476 340580
166 16.5 762482 2.0105e+06 278432 351356
167 16.6 770243 2.02553e+06 281632 357980
168 16.7 782091 2.03748e+06 282029 367124
169 16.8 790682 2.05258e+06 284762 374996
170 16.9 799104 2.06487e+06 288886 385716
171 17.0 807696 2.07526e+06 291629 392316
172 17.1 816360 2.08766e+06 293455 400056
173 17.2 823582 2.10123e+06 294600 410871
174 17.3 833400 2.11464e+06 296546 420457
175 17.4 843474 2.1217e+06 298297 427367
176 17.5 851916 2.13939e+06 301756 438379
177 17.6 860716 2.15484e+06 304479 445897
178 17.7 868406 2.16772e+06 308372 456795
179 17.8 879438 2.17989e+06 309082 464561
180 17.9 888231 2.19557e+06 312804 475801
181 18.0 897437 2.20749e+06 315443 486268
182 18.1 906100 2.21889e+06 317964 492645
183 18.2 914157 2.23204e+06 320215 503433
184 18.3 923485 2.24481e+06 324801 512714
185 18.4 933308 2.25814e+06 328911 522824
186 18.5 942521 2.27501e+06 332008 533261
187 18.6 950541 2.28515e+06 334427 543097
188 18.7 959812 2.29679e+06 337361 550246
189 18.8 968856 2.31509e+06 341532 563251
190 18.9 978769 2.32288e+06 343096 574810
191 19.0 988305 2.33779e+06 347046 583050
192 19.1 996233 2.35491e+06 350982 589428
193 19.2 1.00677e+06 2.3664e+06 352951 603616
194 19.3 1.01404e+06 2.38128e+06 357384 614489
195 19.4 1.02433e+06 2.38848e+06 363376 622459
196 19.5 1.03547e+06 2.40559e+06 365173 635075
197 19.6 1.04181e+06 2.41607e+06 367379 645082
198 19.7 1.05217e+06 2.42564e+06 372387 658039
199 19.8 1.06182e+06 2.44668e+06 378595 666422
200 19.9 1.07065e+06 2.462e+06 378154 679152
201 20.0 1.07888e+06 2.46916e+06 383906 691408

40
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cell,EODf,a_zero,delta_a,dend_tau,input_scaling,mem_tau,noise_strength,ref_period,deltat,tau_a,threshold,v_base,v_offset,v_zero
2010-11-08-al-invivo-1,744.66,9.450855200303527,0.060498440079361865,0.0007742334994649853,31.363843698084207,0.0017257848281706928,0.012409100812593247,0.0010273077926126455,5e-05,0.10223865531575653,1,0,-0.390625,0
2011-10-25-ad-invivo-1,760.50,60.70561732896827,0.15752867579184138,0.004075295861125333,301.37869129345717,0.0029012439225658054,0.02968073683628557,0.0007434544009651972,5e-05,0.11607744742342971,1,0,-34.375,0
2012-04-20-ad-invivo-1,811.57,61.15542998217432,0.18099114092280794,0.006549954587111268,317.4201379309943,0.0014460502988963755,0.03508490455171905,0.001007048276989675,5e-05,0.1718068006049748,1,0,-39.84375,0
2012-04-20-ak-invivo-1,826.07,142.73039605053253,0.34408674592921096,0.0042905816022802655,373.7425313488243,0.0017358116367672107,0.016121166740672717,0.0009347144390364768,5e-05,0.2949535420035986,1,0,21.875,0
2012-06-27-ah-invivo-1,752.07,28.875515577269294,0.20525468484541842,0.010612629869418248,554.4436702347741,0.0017107204697516367,0.0271472345939834,0.0012084459280246903,5e-05,0.11784186849482106,1,0,-148.4375,0
2012-06-27-an-invivo-1,786.29,2.7860389486251593,0.029391448491264804,0.003985634602834923,26.682508784285027,0.001376526707110581,0.003604805695367027,0.0008998947426172306,5e-05,0.13036159256315194,1,0,-4.8828125,0
2012-07-03-ak-invivo-1,928.45,1.1337603254658657,0.009636823781567081,0.0011835211027475872,10.551593612226277,0.0013790127193975233,0.0013081636418144473,0.00011600868359679133,5e-05,0.09604613888260315,1,0,-1.318359375,0
2012-07-12-ag-invivo-1,744.95,3.695738241953972,0.03623619132514362,0.0018084515871059888,14.377436485984251,0.0011056964083457424,0.0041125372009629575,0.0011502269812458804,5e-05,0.11156737983241918,1,0,-0.09765625,0
2012-07-12-ap-invivo-1,772.92,14.804318060119332,0.08421508191399865,0.0013221092024793385,44.13667585034951,0.0014555506316246737,0.016159465360721062,0.00097403156684423,5e-05,0.0714312935754097,1,0,1.171875,0
2012-12-13-af-invivo-1,673.56,23.495808141911642,0.1324559007885552,0.010031950746925707,427.7951451118343,0.003903660950040095,0.018153856801854964,0.0009569332571649322,5e-05,0.13755336036983307,1,0,-111.71875,0
2012-12-13-ah-invivo-1,664.70,28.779813371047524,0.16049265233555093,0.01314225632311085,365.45335373877225,0.0011890432540278138,0.014044744413304281,0.0014219606674122764,5e-05,0.1350142793970573,1,0,-87.5,0
2012-12-13-an-invivo-1,657.91,4.458558193012667,0.030549781596917867,0.001378687228378128,35.834438055915825,0.0029913612464463734,0.005852518402871827,0.001256771411437993,5e-05,0.024870623174021396,1,0,-6.25,0
2012-12-13-ao-invivo-1,657.82,3.2813550587302758,0.02199424769500702,0.001372234851698214,16.707319333864564,0.00221210217479549,0.007347109401659321,0.0008575662334429958,5e-05,0.05671867775854021,1,0,-1.26953125,0
2012-12-20-aa-invivo-1,668.32,4.195725270757472,0.03494694984590694,0.004944939140795805,61.926544628777336,0.001774255774424637,0.006397082203748482,0.0013298764071622482,5e-05,0.06259061000559793,1,0,-14.84375,0
2012-12-20-ab-invivo-1,738.71,9.280347979087807,0.02399411189063231,0.00120664709274584,46.57993094588944,0.001345591696621093,0.0076138573270267875,0.0011385589203656609,5e-05,0.048005025093914855,1,0,-4.78515625,0
2012-12-20-ac-invivo-1,744.95,7.430387927489267,0.03459479087457316,0.0025268601414655655,43.133868817764956,0.0015547575080636315,0.007099446913853285,0.0008625278566343026,5e-05,0.06974558082044995,1,0,-5.6640625,0
2012-12-20-ad-invivo-1,759.82,23.049443800356883,0.07505377496781868,0.004539003389588492,124.17804604983468,0.00106463192556606,0.010618483391053847,0.0010943556029644886,5e-05,0.0931679653142917,1,0,-16.2109375,0
2012-12-20-ae-invivo-1,763.79,28.80721245217218,0.0698601314329484,0.005371563846161885,190.09285659771518,0.001645315861662125,0.011943115636543555,0.0009171798026672154,5e-05,0.06115045426599336,1,0,-31.8359375,0
2012-12-21-ai-invivo-1,787.12,36.7842414315693,0.12763184695279117,0.0031488535186190362,291.18540792514136,0.0020959669717419043,0.03321451893799585,0.0012049087410326699,5e-05,0.12743644124243197,1,0,-54.6875,0
2012-12-21-ak-invivo-1,796.83,2.4867707329904993,0.014127034477017693,0.002861628332432993,31.510428742268093,0.0003974311599786272,0.003398627675991102,0.0006089766381869961,5e-05,0.013593335235228779,1,0,-7.71484375,0
2012-12-21-am-invivo-1,806.15,4.716159805342061,0.03667764979320955,0.004999856382483749,85.64267738935817,0.00241012573550433,0.011026662170574162,0.0011255575558147763,5e-05,0.0544681581478567,1,0,-21.484375,0
2012-12-21-an-invivo-1,812.70,2.6579691222796833,0.012698001151842848,0.002929056579331126,30.47330327087832,0.0006812296678529029,0.006737763075104184,0.0010815182714474752,5e-05,0.029800954358211888,1,0,-6.54296875,0
2013-01-08-aa-invivo-1,800.63,1.1104651443148155,0.008602584313899703,0.0011824418111601317,4.462416862986384,0.0011980061424283523,0.0016372239238665433,0.00038313415155155986,5e-05,0.03752455828256267,1,0,0.5859375,0
2013-01-08-ab-invivo-1,800.25,54.67466209697357,0.23802565736953032,0.00314795259301606,401.47466098307893,0.003233481691970421,0.0435481413010326,0.0004075044135951958,5e-05,0.10601409774748785,1,0,-75.78125,0
2013-02-21-ag-invivo-1,658.70,12.638812661345776,0.10167490092250338,0.003536770266850944,104.74966687228975,0.0016256371684299914,0.014138536979973691,0.0012702670089049608,5e-05,0.07815503514848808,1,0,-20.3125,0
2013-04-10-aa-invivo-1,623.77,7.2029389446183565,0.052641907830485446,0.002224898046101902,62.65798249994464,0.002873209337269388,0.01811955430517219,0.0015625668737142603,5e-05,0.06354491016383691,1,0,-12.5,0
2014-01-16-ak-invivo-1,803.26,2.3120229511581782,0.014165489782626235,0.007112977431183025,24.30632120240236,0.0002851096309430286,0.0028600590320415394,0.0011963117586515453,5e-05,0.06057228972437009,1,0,-4.98046875,0
2014-12-11-aa-invivo-1,651.29,110.31713694365598,1.522266574846523,0.02274369798634087,499.44685404447773,0.0010908984221126568,0.04065807318024823,0.0010262164681389477,5e-05,0.8644462875159566,1,0,-50.0,0
2017-07-18-ah-invivo-1,816.18,4.492478880802049,0.030680049206572385,0.0005510176207879538,11.010435284946723,0.0012660814616981633,0.01178076926186549,0.00010480712226888011,5e-05,0.05347128935359713,1,0,1.171875,0
2017-07-18-ai-invivo-1,817.53,4.836173387076376,0.045960408902420334,0.0005713395854796994,19.082872790172893,0.0017648069889998111,0.024310257773158105,0.00037992426067294776,5e-05,0.021943818745769235,1,0,-2.5390625,0
2017-07-18-aj-invivo-1,818.98,62.59548468438461,0.26688797342324944,0.0063976464842525225,344.9549845381489,0.0006269389203256706,0.03293495593748591,0.00048458937953982373,5e-05,0.08847603129712459,1,0,-48.4375,0
2018-05-08-aa-invivo-1,643.65,23.90042739559335,0.1798294135622658,0.0014978457325112936,196.79744698301027,0.008998581511662336,0.1931709060535164,0.0012206757789855745,5e-05,0.08342443880014652,1,0,-38.28125,0
2018-05-08-ab-invivo-1,646.62,21.143340239280292,0.17918314011340677,0.0021110702241677664,74.44012660456099,0.002104111838094462,0.031480734087501225,0.000841793287555979,5e-05,0.1649339650514045,1,0,-3.125,0
2018-05-08-ac-invivo-1,655.16,35.32000871480389,0.3365254255760804,0.006773219307007808,139.23166556708537,0.0004350491142382615,0.028336890851257814,0.0013549977866199972,5e-05,0.1531910034411788,1,0,-12.5,0
2018-05-08-ad-invivo-1,655.66,10.56270995846859,0.04501376693597617,0.0013544139474406026,32.871669695970056,0.001129016694314504,0.01343806066427332,0.0007800007176441471,5e-05,0.08300605346748607,1,0,-0.09765625,0
2018-05-08-ae-invivo-1,649.48,23.236002441272873,0.1649467891961967,0.003929215662714291,139.62843570490134,0.0014895499625897,0.020705895621135995,0.0013078805846238773,5e-05,0.12368546391523849,1,0,-21.09375,0
2018-05-08-af-invivo-1,649.93,50.67440031212505,0.15942545846977396,0.008870877837080987,266.86501353697287,0.0011885343507996296,0.01831310334923414,0.0011045939825865964,5e-05,0.061964902843727104,1,0,-35.15625,0
2018-05-08-ai-invivo-1,653.62,17.97588058957365,0.12223368623652905,0.0022403560787985152,58.600496136896105,0.00113939954736546,0.02035182654993045,0.0014268613608903935,5e-05,0.07235575003635941,1,0,-1.5625,0
2018-06-25-ad-invivo-1,840.79,62.49268603283534,0.23947474463722357,0.001883927876295424,286.0953844311519,0.002389671017958955,0.0698177647604567,0.0010856424997856035,5e-05,0.09634714314913008,1,0,-29.6875,0
1 cell EODf a_zero delta_a dend_tau input_scaling mem_tau noise_strength ref_period deltat tau_a threshold v_base v_offset v_zero
2 2010-11-08-al-invivo-1 744.66 9.450855200303527 0.060498440079361865 0.0007742334994649853 31.363843698084207 0.0017257848281706928 0.012409100812593247 0.0010273077926126455 5e-05 0.10223865531575653 1 0 -0.390625 0
3 2011-10-25-ad-invivo-1 760.50 60.70561732896827 0.15752867579184138 0.004075295861125333 301.37869129345717 0.0029012439225658054 0.02968073683628557 0.0007434544009651972 5e-05 0.11607744742342971 1 0 -34.375 0
4 2012-04-20-ad-invivo-1 811.57 61.15542998217432 0.18099114092280794 0.006549954587111268 317.4201379309943 0.0014460502988963755 0.03508490455171905 0.001007048276989675 5e-05 0.1718068006049748 1 0 -39.84375 0
5 2012-04-20-ak-invivo-1 826.07 142.73039605053253 0.34408674592921096 0.0042905816022802655 373.7425313488243 0.0017358116367672107 0.016121166740672717 0.0009347144390364768 5e-05 0.2949535420035986 1 0 21.875 0
6 2012-06-27-ah-invivo-1 752.07 28.875515577269294 0.20525468484541842 0.010612629869418248 554.4436702347741 0.0017107204697516367 0.0271472345939834 0.0012084459280246903 5e-05 0.11784186849482106 1 0 -148.4375 0
7 2012-06-27-an-invivo-1 786.29 2.7860389486251593 0.029391448491264804 0.003985634602834923 26.682508784285027 0.001376526707110581 0.003604805695367027 0.0008998947426172306 5e-05 0.13036159256315194 1 0 -4.8828125 0
8 2012-07-03-ak-invivo-1 928.45 1.1337603254658657 0.009636823781567081 0.0011835211027475872 10.551593612226277 0.0013790127193975233 0.0013081636418144473 0.00011600868359679133 5e-05 0.09604613888260315 1 0 -1.318359375 0
9 2012-07-12-ag-invivo-1 744.95 3.695738241953972 0.03623619132514362 0.0018084515871059888 14.377436485984251 0.0011056964083457424 0.0041125372009629575 0.0011502269812458804 5e-05 0.11156737983241918 1 0 -0.09765625 0
10 2012-07-12-ap-invivo-1 772.92 14.804318060119332 0.08421508191399865 0.0013221092024793385 44.13667585034951 0.0014555506316246737 0.016159465360721062 0.00097403156684423 5e-05 0.0714312935754097 1 0 1.171875 0
11 2012-12-13-af-invivo-1 673.56 23.495808141911642 0.1324559007885552 0.010031950746925707 427.7951451118343 0.003903660950040095 0.018153856801854964 0.0009569332571649322 5e-05 0.13755336036983307 1 0 -111.71875 0
12 2012-12-13-ah-invivo-1 664.70 28.779813371047524 0.16049265233555093 0.01314225632311085 365.45335373877225 0.0011890432540278138 0.014044744413304281 0.0014219606674122764 5e-05 0.1350142793970573 1 0 -87.5 0
13 2012-12-13-an-invivo-1 657.91 4.458558193012667 0.030549781596917867 0.001378687228378128 35.834438055915825 0.0029913612464463734 0.005852518402871827 0.001256771411437993 5e-05 0.024870623174021396 1 0 -6.25 0
14 2012-12-13-ao-invivo-1 657.82 3.2813550587302758 0.02199424769500702 0.001372234851698214 16.707319333864564 0.00221210217479549 0.007347109401659321 0.0008575662334429958 5e-05 0.05671867775854021 1 0 -1.26953125 0
15 2012-12-20-aa-invivo-1 668.32 4.195725270757472 0.03494694984590694 0.004944939140795805 61.926544628777336 0.001774255774424637 0.006397082203748482 0.0013298764071622482 5e-05 0.06259061000559793 1 0 -14.84375 0
16 2012-12-20-ab-invivo-1 738.71 9.280347979087807 0.02399411189063231 0.00120664709274584 46.57993094588944 0.001345591696621093 0.0076138573270267875 0.0011385589203656609 5e-05 0.048005025093914855 1 0 -4.78515625 0
17 2012-12-20-ac-invivo-1 744.95 7.430387927489267 0.03459479087457316 0.0025268601414655655 43.133868817764956 0.0015547575080636315 0.007099446913853285 0.0008625278566343026 5e-05 0.06974558082044995 1 0 -5.6640625 0
18 2012-12-20-ad-invivo-1 759.82 23.049443800356883 0.07505377496781868 0.004539003389588492 124.17804604983468 0.00106463192556606 0.010618483391053847 0.0010943556029644886 5e-05 0.0931679653142917 1 0 -16.2109375 0
19 2012-12-20-ae-invivo-1 763.79 28.80721245217218 0.0698601314329484 0.005371563846161885 190.09285659771518 0.001645315861662125 0.011943115636543555 0.0009171798026672154 5e-05 0.06115045426599336 1 0 -31.8359375 0
20 2012-12-21-ai-invivo-1 787.12 36.7842414315693 0.12763184695279117 0.0031488535186190362 291.18540792514136 0.0020959669717419043 0.03321451893799585 0.0012049087410326699 5e-05 0.12743644124243197 1 0 -54.6875 0
21 2012-12-21-ak-invivo-1 796.83 2.4867707329904993 0.014127034477017693 0.002861628332432993 31.510428742268093 0.0003974311599786272 0.003398627675991102 0.0006089766381869961 5e-05 0.013593335235228779 1 0 -7.71484375 0
22 2012-12-21-am-invivo-1 806.15 4.716159805342061 0.03667764979320955 0.004999856382483749 85.64267738935817 0.00241012573550433 0.011026662170574162 0.0011255575558147763 5e-05 0.0544681581478567 1 0 -21.484375 0
23 2012-12-21-an-invivo-1 812.70 2.6579691222796833 0.012698001151842848 0.002929056579331126 30.47330327087832 0.0006812296678529029 0.006737763075104184 0.0010815182714474752 5e-05 0.029800954358211888 1 0 -6.54296875 0
24 2013-01-08-aa-invivo-1 800.63 1.1104651443148155 0.008602584313899703 0.0011824418111601317 4.462416862986384 0.0011980061424283523 0.0016372239238665433 0.00038313415155155986 5e-05 0.03752455828256267 1 0 0.5859375 0
25 2013-01-08-ab-invivo-1 800.25 54.67466209697357 0.23802565736953032 0.00314795259301606 401.47466098307893 0.003233481691970421 0.0435481413010326 0.0004075044135951958 5e-05 0.10601409774748785 1 0 -75.78125 0
26 2013-02-21-ag-invivo-1 658.70 12.638812661345776 0.10167490092250338 0.003536770266850944 104.74966687228975 0.0016256371684299914 0.014138536979973691 0.0012702670089049608 5e-05 0.07815503514848808 1 0 -20.3125 0
27 2013-04-10-aa-invivo-1 623.77 7.2029389446183565 0.052641907830485446 0.002224898046101902 62.65798249994464 0.002873209337269388 0.01811955430517219 0.0015625668737142603 5e-05 0.06354491016383691 1 0 -12.5 0
28 2014-01-16-ak-invivo-1 803.26 2.3120229511581782 0.014165489782626235 0.007112977431183025 24.30632120240236 0.0002851096309430286 0.0028600590320415394 0.0011963117586515453 5e-05 0.06057228972437009 1 0 -4.98046875 0
29 2014-12-11-aa-invivo-1 651.29 110.31713694365598 1.522266574846523 0.02274369798634087 499.44685404447773 0.0010908984221126568 0.04065807318024823 0.0010262164681389477 5e-05 0.8644462875159566 1 0 -50.0 0
30 2017-07-18-ah-invivo-1 816.18 4.492478880802049 0.030680049206572385 0.0005510176207879538 11.010435284946723 0.0012660814616981633 0.01178076926186549 0.00010480712226888011 5e-05 0.05347128935359713 1 0 1.171875 0
31 2017-07-18-ai-invivo-1 817.53 4.836173387076376 0.045960408902420334 0.0005713395854796994 19.082872790172893 0.0017648069889998111 0.024310257773158105 0.00037992426067294776 5e-05 0.021943818745769235 1 0 -2.5390625 0
32 2017-07-18-aj-invivo-1 818.98 62.59548468438461 0.26688797342324944 0.0063976464842525225 344.9549845381489 0.0006269389203256706 0.03293495593748591 0.00048458937953982373 5e-05 0.08847603129712459 1 0 -48.4375 0
33 2018-05-08-aa-invivo-1 643.65 23.90042739559335 0.1798294135622658 0.0014978457325112936 196.79744698301027 0.008998581511662336 0.1931709060535164 0.0012206757789855745 5e-05 0.08342443880014652 1 0 -38.28125 0
34 2018-05-08-ab-invivo-1 646.62 21.143340239280292 0.17918314011340677 0.0021110702241677664 74.44012660456099 0.002104111838094462 0.031480734087501225 0.000841793287555979 5e-05 0.1649339650514045 1 0 -3.125 0
35 2018-05-08-ac-invivo-1 655.16 35.32000871480389 0.3365254255760804 0.006773219307007808 139.23166556708537 0.0004350491142382615 0.028336890851257814 0.0013549977866199972 5e-05 0.1531910034411788 1 0 -12.5 0
36 2018-05-08-ad-invivo-1 655.66 10.56270995846859 0.04501376693597617 0.0013544139474406026 32.871669695970056 0.001129016694314504 0.01343806066427332 0.0007800007176441471 5e-05 0.08300605346748607 1 0 -0.09765625 0
37 2018-05-08-ae-invivo-1 649.48 23.236002441272873 0.1649467891961967 0.003929215662714291 139.62843570490134 0.0014895499625897 0.020705895621135995 0.0013078805846238773 5e-05 0.12368546391523849 1 0 -21.09375 0
38 2018-05-08-af-invivo-1 649.93 50.67440031212505 0.15942545846977396 0.008870877837080987 266.86501353697287 0.0011885343507996296 0.01831310334923414 0.0011045939825865964 5e-05 0.061964902843727104 1 0 -35.15625 0
39 2018-05-08-ai-invivo-1 653.62 17.97588058957365 0.12223368623652905 0.0022403560787985152 58.600496136896105 0.00113939954736546 0.02035182654993045 0.0014268613608903935 5e-05 0.07235575003635941 1 0 -1.5625 0
40 2018-06-25-ad-invivo-1 840.79 62.49268603283534 0.23947474463722357 0.001883927876295424 286.0953844311519 0.002389671017958955 0.0698177647604567 0.0010856424997856035 5e-05 0.09634714314913008 1 0 -29.6875 0

34
regimes.py
View File

@ -1,12 +1,16 @@
import os
import numpy as np
from scipy.stats import linregress
import matplotlib.pyplot as plt
from pathlib import Path
from scipy.stats import linregress
from numba import jit
from thunderlab.tabledata import TableData
from plotstyle import plot_style, lighter, darker
data_path = Path('data')
cell_path = data_path / 'cells'
def load_models(file):
""" Load model parameter from csv file.
@ -21,7 +25,7 @@ def load_models(file):
For each cell a dictionary with model parameters.
"""
parameters = []
with open(file, 'r') as file:
with file.open('r') as file:
header_line = file.readline()
header_parts = header_line.strip().split(",")
keys = header_parts
@ -192,9 +196,12 @@ def peak_ampl(freqs, psd, f):
def compute_peaks(name, cell, alpha_max, beatf1, beatf2, nfft, trials):
file_name = f'{name}-contrastpeaks.csv'
if os.path.exists(file_name):
data = TableData(file_name)
data_file = cell_path / f'{name}-contrastpeaks.csv'
data = TableData(data_file)
return data
"""
if data_file.exists():
data = TableData(data_file)
return data
dt = 0.0001
tmax = nfft*dt
@ -217,9 +224,9 @@ def compute_peaks(name, cell, alpha_max, beatf1, beatf2, nfft, trials):
data.append('f2', 'Hz', '%g', ampl_f2)
data.append('f1+f2', 'Hz', '%g', ampl_sum)
data.append('f2-f1', 'Hz', '%g', ampl_diff)
data.write(file_name)
data.write(data_file)
return data
"""
def amplitude(power):
power -= power[0]
@ -281,23 +288,14 @@ def plot_peaks(ax, s, data, alphas):
if __name__ == '__main__':
parameters = load_models('models.csv')
parameters = load_models(data_path / 'punitmodels.csv')
cell_name = '2013-01-08-aa-invivo-1' # 138Hz, CV=0.26: perfect!
beatf1 = 40
beatf2 = 138
# cell_name = '2012-07-03-ak-invivo-1' # 128Hz, CV=0.24
# cell_name = '2018-05-08-ae-invivo-1' # 142Hz, CV=0.48
"""
parameters = load_models('models_big_fit_d_right.csv')
cell_name = '2013-01-08-aa-invivo-1' # 131Hz, CV=0.04: wrong!
beatf1 = 30
beatf2 = 132
"""
cell = cell_parameters(parameters, cell_name)
for k in cell:
print(k, cell[k])
s = plot_style()
s.lwmid = 1.0