oephys2nix/README.md

Motivation

oephys2nix is a comand-line-interface (cli), which helps converting relacs data and open-ephys data to a single nix file. For making life easier to work with behavior and neuronal data.

Installation and Documentation

Here my general workflow for installing the package.

git clone https://whale.am28.uni-tuebingen.de/git/awendt/oephys2nix
cd oephys2nix
python -m venv .venv
source .venv/bin/activate
pip install -e .

To see the documentation you need to install quarto. Please follow the installation instructions for quarto, and install the extra dependencies.

pip install "[.docs]"
cd doc
quartodoc build
quarto preview

which should open the documentation at localhost.

To-Dos

• Analyzed the delay in the two recoding systems
• Analyzed the difference in sample rate
• Get offset and gain from open-ephys recorded lines.