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[updating to read phy]

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wendtalexander
2026-07-03 08:54:41 +02:00
parent 128bac0f23
commit c429c2bbbf
1 changed files with 3 additions and 1 deletions
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oephys2nix/sorting.py
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@@ -4,6 +4,8 @@ import pathlib
import nixio import nixio
import numpy as np import numpy as np
import spikeinterface.core as si import spikeinterface.core as si
import spikeinterface.extractors as extractors
from IPython import embed
from nixio.exceptions import DuplicateName from nixio.exceptions import DuplicateName
from rich.console import Console from rich.console import Console
@@ -28,7 +30,7 @@ class AppendSorting:
def __init__(self, sorter_path: pathlib.Path, recording_path: pathlib.Path): def __init__(self, sorter_path: pathlib.Path, recording_path: pathlib.Path):
self.sorter_path = sorter_path self.sorter_path = sorter_path
self.recording_path = recording_path self.recording_path = recording_path
self.sorting = si.load_sorting_analyzer(self.sorter_path) self.sorting = extractors.read_phy(self.sorter_path)
self.nixfile = nixio.File.open(str(self.recording_path), nixio.FileMode.ReadWrite) self.nixfile = nixio.File.open(str(self.recording_path), nixio.FileMode.ReadWrite)
self.block = self.nixfile.blocks[0] self.block = self.nixfile.blocks[0]
self.das = self.block.data_arrays self.das = self.block.data_arrays