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fit bursties and tests

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This commit is contained in:
a.ott 2020-07-28 09:34:35 +02:00
parent d100524e84
commit 05c808e90b
2 changed files with 7 additions and 5 deletions
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2
run_cellwise_fitting.sh
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@ -1,5 +1,5 @@
for file in data/invivo/*; do
for file in data/invivo_bursty/*; do
if [ -d "$file" ]; then
nice python3 run_Fitter.py --cell $file
fi

10
test.py
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@ -16,13 +16,15 @@ from scipy.optimize import curve_fit
from scipy.signal import find_peaks
from thunderfish.eventdetection import threshold_crossing_times, threshold_crossings, detect_peaks
folder = "./results/invivo_results/2010-11-08-al-invivo-1/"
for item in os.listdir(folder):
fit_path = os.path.join(folder, item)
cells = ["data/invivo/2013-04-16-ad-invivo-1", "data/invivo/2014-01-16-aj-invivo-1", "data/invivo/2015-01-20-ad-invivo-1", "data/invivo_bursty/2012-05-07-aa-invivo-1"]
fit = ModelFit(fit_path)
print(fit.get_fit_routine_error())
# fit.generate_master_plot()
for cell in cells:
data = CellData(cell)
print(len(data.get_base_traces(CellData.V1)))
quit()