diff --git a/run_cellwise_fitting.sh b/run_cellwise_fitting.sh index abf5d2e..8921fa8 100755 --- a/run_cellwise_fitting.sh +++ b/run_cellwise_fitting.sh @@ -1,5 +1,5 @@ -for file in data/invivo/*; do +for file in data/invivo_bursty/*; do if [ -d "$file" ]; then nice python3 run_Fitter.py --cell $file fi diff --git a/test.py b/test.py index 5393323..77be16e 100644 --- a/test.py +++ b/test.py @@ -16,13 +16,15 @@ from scipy.optimize import curve_fit from scipy.signal import find_peaks from thunderfish.eventdetection import threshold_crossing_times, threshold_crossings, detect_peaks +folder = "./results/invivo_results/2010-11-08-al-invivo-1/" +for item in os.listdir(folder): + fit_path = os.path.join(folder, item) -cells = ["data/invivo/2013-04-16-ad-invivo-1", "data/invivo/2014-01-16-aj-invivo-1", "data/invivo/2015-01-20-ad-invivo-1", "data/invivo_bursty/2012-05-07-aa-invivo-1"] + fit = ModelFit(fit_path) + print(fit.get_fit_routine_error()) + # fit.generate_master_plot() -for cell in cells: - data = CellData(cell) - print(len(data.get_base_traces(CellData.V1))) quit()