149 lines
4.5 KiB
Python
149 lines
4.5 KiB
Python
import matplotlib.pyplot as plt
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import numpy as np
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import pylab
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from IPython import embed
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from scipy.optimize import curve_fit
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from matplotlib.mlab import specgram
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import os
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from jar_functions import import_data
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from jar_functions import import_amfreq
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from scipy.optimize import curve_fit
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from jar_functions import sin_response
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from jar_functions import mean_noise_cut
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from jar_functions import gain_curve_fit
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def take_second(elem): # function for taking the names out of files
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return elem[1]
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identifier = ['2019lepto03']
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for ident in identifier:
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predict = []
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rootmeansquare = []
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threshold = []
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gain = []
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mgain = []
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phaseshift = []
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mphaseshift = []
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amfreq = []
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amf = [0.001, 0.002, 0.005, 0.01, 0.02, 0.05, 0.1, 0.2, 0.5, 1]
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currf = None
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idxlist = []
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data = sorted(np.load('5Hz_%s files.npy' %ident), key = take_second) # list with filenames in it
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for i, d in enumerate(data):
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dd = list(d)
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jar = np.load('5Hz_%s.npy' %dd) # load data for every file name
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jm = jar - np.mean(jar) # low-pass filtering by subtracting mean
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print(dd)
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time = np.load('5Hz_%s time.npy' %dd) # time file
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dt = time[1] - time[0]
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n = int(1/float(d[1])/dt)
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cutf = mean_noise_cut(jm, n = n)
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cutt = time
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sinv, sinc = curve_fit(sin_response, time, jm - cutf, [float(d[1]), 2, 0.5]) # fitting
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print('frequency, phaseshift, amplitude:', sinv)
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p = sinv[1]
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A = np.sqrt(sinv[2] ** 2)
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f = float(d[1])
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if sinv[2] < 0:
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p = p + np.pi
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phaseshift.append(p)
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gain.append(A)
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if f not in amfreq:
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amfreq.append(f)
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# root mean square
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RMS = np.sqrt(np.mean(((jm - cutf) - sin_response(cutt, sinv[0], sinv[1], sinv[2]))**2))
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thresh = A / np.sqrt(2)
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# mean over same amfreqs for phase and gain
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if currf is None or currf == d[1]:
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currf = d[1]
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idxlist.append(i)
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else: # currf != f
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meanf = [] # lists to make mean of
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meanp = []
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meanrms = []
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meanthresh = []
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for x in idxlist:
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meanf.append(gain[x])
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meanp.append(phaseshift[x])
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meanrms.append(RMS)
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meanthresh.append(thresh)
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meanedf = np.mean(meanf)
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meanedp = np.mean(meanp)
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meanedrms = np.mean(meanrms)
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meanedthresh = np.mean(meanthresh)
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mgain.append(meanedf)
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mphaseshift.append(meanedp)
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rootmeansquare.append(meanedrms)
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threshold.append(meanedthresh)
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currf = d[1] # set back for next loop
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idxlist = [i]
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meanf = []
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meanp = []
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meanrms = []
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meanthresh = []
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for y in idxlist:
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meanf.append(gain[y])
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meanp.append(phaseshift[y])
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meanrms.append(RMS)
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meanthresh.append(thresh)
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meanedf = np.mean(meanf)
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meanedp = np.mean(meanp)
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meanedrms = np.mean(meanrms)
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meanedthresh = np.mean(meanthresh)
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mgain.append(meanedf)
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mphaseshift.append(meanedp)
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rootmeansquare.append(meanedrms)
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threshold.append(meanedthresh)
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# as arrays
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mgain_arr = np.array(mgain)
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mphaseshift_arr = np.array(mphaseshift)
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amfreq_arr = np.array(amfreq)
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rootmeansquare_arr = np.array(rootmeansquare)
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threshold_arr = np.array(threshold)
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# condition needed to be fulfilled: RMS < threshold or RMS < mean(RMS)
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idx_arr = (rootmeansquare_arr < threshold_arr) | (rootmeansquare_arr < np.mean(rootmeansquare_arr))
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fig = plt.figure()
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ax0 = fig.add_subplot(2, 1, 1)
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ax0.plot(amfreq_arr[idx_arr], mgain_arr[idx_arr], 'o')
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ax0.set_yscale('log')
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ax0.set_xscale('log')
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ax0.set_title('gaincurve 2019lepto03, deltaf = -5Hz')
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ax0.set_ylabel('gain [Hz/(mV/cm)]')
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ax0.set_xlabel('envelope_frequency [Hz]')
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#plt.savefig('%s gain' % data[0][0])
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ax1 = fig.add_subplot(2, 1, 2, sharex = ax0)
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ax1.plot(amfreq, threshold, 'o-', label = 'threshold', color = 'b')
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ax1.set_xscale('log')
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ax1.plot(amfreq, rootmeansquare, 'o-', label = 'RMS', color ='orange')
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ax1.set_xscale('log')
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ax1.set_xlabel('envelope_frequency [Hz]')
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ax1.set_ylabel('RMS [Hz]')
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plt.legend()
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pylab.show()
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#np.save('phaseshift_%s' % ident, mphaseshift_arr[idx_arr])
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#np.save('gain_%s' %ident, mgain_arr[idx_arr])
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#np.save('amf_%s' %ident, amfreq_arr[idx_arr])
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embed() |