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scientificComputing/projects/project_fano_slope/lifboltzmannspikes.m

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Matlab

function spikes = lifboltzmannspikes(trials, input, tmax, gain)
% Generate spike times of a leaky integrate-and-fire neuron.
% trials: the number of trials to be generated.
% input: the stimulus intensity.
% tmax: the duration of a trial.
% gain: gain of the neuron, i.e. the slope factor of the boltzmann input.
tau = 0.01;
D = 1e-2;
imax = 25;
ithresh = 10;
slope = gain;
vreset = 0.0;
vthresh = 10.0;
dt = 1e-4;
n = ceil(tmax/dt);
inb = imax./(1.0+exp(-slope.*(input - ithresh)));
spikes = cell(trials, 1);
for k=1:trials
times = [];
j = 1;
v = vreset + (vthresh - vreset) * rand();
noise = sqrt(2.0*D)*randn(n, 1)/sqrt(dt);
for i=1:n
v = v + (- v + noise(i) + inb)*dt/tau;
if v >= vthresh
v = vreset;
times(j) = i*dt;
j = j + 1;
end
end
spikes{k} = times;
end
end