\documentclass[12pt]{report}

\input{header}

\setcounter{maxexercise}{10000}  % show listings up to exercise maxexercise

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\begin{document} 

\maketitle

\tableofcontents

\graphicspath{{programming/lectures/}{programming/lectures/images/}}
\lstset{inputpath=programming/code}
\include{programming/lectures/programming}

\graphicspath{{statistics/lecture/}{statistics/lecture/figures/}}
\lstset{inputpath=statistics/code}
\include{statistics/lecture/statistics}

\graphicspath{{bootstrap/lecture/}{bootstrap/lecture/figures/}}
\lstset{inputpath=bootstrap/code}
\include{bootstrap/lecture/bootstrap}

\graphicspath{{regression/lecture/}{regression/lecture/figures/}}
\lstset{inputpath=regression/code}
%\include{regression/lecture/linear_regression}

\graphicspath{{likelihood/lecture/}{likelihood/lecture/figures/}}
\lstset{inputpath=likelihood/code}
\include{likelihood/lecture/likelihood}

\graphicspath{{pointprocesses/lecture/}{pointprocesses/lecture/figures/}}
\lstset{inputpath=pointprocesses/code/}
\renewcommand{\texinputpath}{pointprocesses/lecture/}
\include{pointprocesses/lecture/pointprocesses}

\graphicspath{{spike_trains/lecture/images/}}
\lstset{inputpath=spike_trains/code/}
\include{spike_trains/lecture/psth_sta}

\graphicspath{{designpattern/lecture}{designpattern/lecture/figures}}
\lstset{inputpath=designpattern/code/}
\include{designpattern/lecture/designpattern}

\end{document}