import numpy as np import scipy.io as scio import os from IPython import embed def boltzmann(x, y_max, slope, inflection): """ The underlying Boltzmann function. .. math:: f(x) = y_max / \exp{-slope*(x-inflection} :param x: The x values. :param y_max: The maximum value. :param slope: The slope parameter k :param inflection: the position of the inflection point. :return: the y values. """ y = y_max / (1 + np.exp(-slope * (x - inflection))) return y class Animal(object): def __init__(self, delay, learning_rate, volatility, responsiveness): """ :param delay: :param learning_rate: delta percent_correct per session :param volatility: 0 -> 1 the noise in the decision :param responsiveness: 0 -> 1 probability of actually conducting a trial """ self.__delay = delay self.__learning_rate = learning_rate self.__volatility = volatility self.__responsiveness = responsiveness def simulate(self, session_count=10, trials=20, task_difficulties=[]): """ :param task_difficulties gives a malus on the learning rate range 0 - 1 """ tasks = 1 if len(task_difficulties) == 0 else len(task_difficulties) if len(task_difficulties) == 0: task_difficulties = [0] avg_perf = np.zeros((session_count, tasks)) err_perf = np.zeros((session_count, tasks)) trials_performed = np.zeros((session_count, tasks)) for i in range(session_count): for j in range(tasks): learning_rate = self.__learning_rate * (1-task_difficulties[j]) base_performance = boltzmann(i, 1.0, learning_rate, self.__delay) * 0.5 + 0.5 noise = np.random.randn(trials) * (self.__volatility * (1-task_difficulties[j])) performances = np.random.rand(trials) < (base_performance + noise) trials_completed = np.random.rand(trials) < self.__responsiveness trials_performed[i, j] = np.sum(trials_completed) avg_perf[i, j] = np.sum(performances[trials_completed]) / trials_performed[i, j] err_perf[i, j] = np.sqrt(trials_performed[i, j] * (avg_perf[i, j]/100) * (1 - avg_perf[i, j])) return avg_perf, err_perf, trials_performed def save_performance(avg_perf, err_perf, trials_completed, tasks, animal_id): result_folder="experiment" for i in range(avg_perf.shape[0]): performance = avg_perf[i, :] error = err_perf[i, :] trials = trials_completed[i, :] scio.savemat(os.path.join(result_folder, "Animal_%i_Session_%i.mat" % (animal_id, i+1)), {"performance": performance, "perf_std": error, "trials": trials, "tasks": tasks}) if __name__ == "__main__": session_count = [25, 32, 40, 30] task_difficulties = [0, 0.75, 0.95] delays = [5, 10, 12, 20] learning_rates = np.array([0.25, 0.5, 1., 1.5]) volatilities = np.random.rand(4) * 0.25 responsivness = np.random.rand(4) * 0.25 + 0.75 for i in range(len(delays)): d = delays[i] lr = learning_rates[i] v = volatilities[i] r = responsivness[i] a = Animal(d, lr, v, r) ap, ep, tp = a.simulate(session_count=session_count[i], task_difficulties=task_difficulties) save_performance(ap, ep, tp, ['a', 'b', 'c'], i+1)