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@ -4,7 +4,6 @@
\usepackage{pgf} \usepackage{pgf}
%\usepackage{pgf,pgfarrows,pgfnodes,pgfautomata,pgfheaps,pgfshade} %\usepackage{pgf,pgfarrows,pgfnodes,pgfautomata,pgfheaps,pgfshade}
%\usepackage{multimedia} %\usepackage{multimedia}
\usepackage[ngerman]{babel}
\usepackage[latin1]{inputenc} \usepackage[latin1]{inputenc}
\usepackage{amsmath} \usepackage{amsmath}
\usepackage{bm} \usepackage{bm}
@ -86,13 +85,13 @@ Bernstein Center T\"ubingen}
\end{frame} \end{frame}
\begin{frame} \begin{frame}
\frametitle{Plan} \frametitle{plan}
\setcounter{tocdepth}{1} \setcounter{tocdepth}{1}
\tableofcontents \tableofcontents
\end{frame} \end{frame}
\begin{frame} \begin{frame}
\frametitle{Information \"uber Statistik} \frametitle{information}
\begin{itemize} \begin{itemize}
\item Samuels, M. L., Wittmer, J. A., \& Schaffner, \item Samuels, M. L., Wittmer, J. A., \& Schaffner,
A. A. (2010). Statistics for the Life Sciences (4th ed., A. A. (2010). Statistics for the Life Sciences (4th ed.,
@ -114,41 +113,41 @@ Bernstein Center T\"ubingen}
% PCA % PCA
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\section[Präludium]{Präludium} \section[Präludium]{Prelude}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% ---------------------------------------------------------- % ----------------------------------------------------------
\begin{frame} \begin{frame}
\frametitle{Meine Erwartungen an Masterstudenten} \frametitle{my expectations to this course}
\begin{itemize} \begin{itemize}
\item Interesse und Partizipation \item interest and participation
\item Motivation Konzepte zu verstehen und zu hinterfragen \item motivation to understand and question concepts
\item einen hohen wissenschaftlichen Qualitätsstandard \item high scientific standard
\item intellektuelle Redlichkeit \item intellectual honesty
\item ehrliche Kooperation \item sincere cooperation
\end{itemize} \end{itemize}
\end{frame} \end{frame}
% ---------------------------------------------------------- % ----------------------------------------------------------
\begin{frame} \begin{frame}
\frametitle{diese Woche wird ...} \frametitle{this week will be ...}
\only<1>{ \only<1>{
\framesubtitle{... kein \sout{Spaß} Zuckerschlecken} \framesubtitle{... no \sout{fun} piece of cake}
\begin{center} \begin{center}
\includegraphics[height=0.7\textheight]{figs/feeding.jpg} \includegraphics[height=0.7\textheight]{figs/feeding.jpg}
\end{center} \end{center}
} }
\only<2>{ \only<2>{
\framesubtitle{... kein \sout{Spaß} Zuckerschlecken} \framesubtitle{... no \sout{fun} piece of cake}
\begin{center} \begin{center}
\includegraphics[height=0.7\textheight]{figs/nacho-trainer.jpg} \includegraphics[height=0.7\textheight]{figs/nacho-trainer.jpg}
\end{center} \end{center}
} }
\only<3>{ \only<3>{
\framesubtitle{... keine Vorlesung (Bitte!)} \framesubtitle{... no lecture (please!)}
\begin{center} \begin{center}
\includegraphics[height=0.7\textheight]{figs/soccer.jpg} \includegraphics[height=0.7\textheight]{figs/soccer.jpg}
\end{center} \end{center}
@ -158,138 +157,131 @@ Bernstein Center T\"ubingen}
% ---------------------------------------------------------- % ----------------------------------------------------------
\begin{frame} \begin{frame}
\frametitle{Was Ihr diese Woche lernen solltet} \frametitle{What you should learn this week}
\begin{itemize} \begin{itemize}
\item Eigenschaften guter Plots \item What makes good plots?
\item Was ist deskriptive/ inferentielle Statistik? \item What is descriptive/inferential statistics?
\item die generelle Struktur statistischer Tests \item What is the general structure of a statistical test?
\item Was ist/bedeutet ein p-Wert? \item What does a p-value mean?
\item Wie bastele ich mir meinen eigenen Test? \item How can I build my own tests?
\item Wie groß muß mein $n$ sein? \item How large should my $n$ be?
\item Principal Component Analysis (PCA) \item What is {\em maximum likelihood} and why is it important?
\end{itemize} \end{itemize}
\end{frame} \end{frame}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\section[deskriptive Statistik, Fehlerbalken \& Plots]{Day 1 -- Deskriptive \section[descriptive statistics, errorbars, and plots]{Day 1 -- descriptive statistics, errorbars, and plots}
Statistik, Fehlerbalken und Plots}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\subsection{Arten von Daten} \subsection{types of data}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\begin{frame} \begin{frame}
\frametitle{Datenskalen} \frametitle{data scales}
\framesubtitle{Welche Datentypen gibt es in der Statistik?} \framesubtitle{What data types are distinguished in statistics?}
\Large \Large
{\bf Warum sind Datentypen wichtig?} {\bf Why are data types important?}
\pause \pause
\begin{itemize} \begin{itemize}
\item Auswahl passender Statistiken \item selection of statistics
\item Auswahl angemessener Plots \item selection of plots
\item Auswahl von korrekten Tests \item selection of correct tests
\end{itemize} \end{itemize}
\end{frame} \end{frame}
%------------------------------------------------------------- %-------------------------------------------------------------
\begin{frame} \begin{frame}
\frametitle{Datenskalen} \frametitle{data scales}
\framesubtitle{Nominalskala (engl. ,,categorial'')} \framesubtitle{nominal/categorial scale}
\begin{itemize} \begin{itemize}
\item Eigenschaften wie Zelltyp, Versuchsgruppe \item properties like cell type, experimental group (i.e. treatment
\item jede Beobachtung wird eine bestimmten Klasse (Kategorie) 1, treatment 2, control)
zugeordnet \item each observation/sample is put into one category
\item Die Klassen besitzen keine sinnvolle Ordnung \item there is no reasonable order among the categories
\item Beispiel: [Zapfen, Stäbchen] vs. [Stäbchen, Zapfen] \item example: [rods, cones] vs. [cones, rods]
\end{itemize} \end{itemize}
\end{frame} \end{frame}
%------------------------------------------------------------- %-------------------------------------------------------------
\begin{frame} \begin{frame}
\frametitle{Datenskalen} \frametitle{data scales}
\framesubtitle{Ordinalskala (engl. ,,ordinal'')} \framesubtitle{ordinal scale}
\begin{itemize} \begin{itemize}
\item Wie Nominalskala, nur ist sinnvolles Ordnen m\"oglich \item like nominal scale, but there is an order
\item {\bf aber:} Unterschiede zwischen den Werten bzw. Klassen \item {\bf but:} there is no reasonable measure of {\em distance}
nicht vergleichbar (keine Abst\"ande) between the classes
\item Beispiel: Platzierungen, G\"uteklassen, Ratingskalen \item examples: ranks, ratings
\end{itemize} \end{itemize}
\end{frame} \end{frame}
%------------------------------------------------------------- %-------------------------------------------------------------
\begin{frame} \begin{frame}
\frametitle{Datenskalen} \frametitle{data scales}
\framesubtitle{Intervallskala (engl. ,,interval'')} \framesubtitle{interval scale}
\begin{itemize} \begin{itemize}
\item quantitative/metrische Werte \item quantitative/metric values
\item Abst\"ande zwischen Werten sind sinnvoll, aber es gibt keine \item reasonable measure of distance between values but no absolute zero
absoluten Nullpunkt \item examples: temperature in $^\circ$C
\item Beispiel: physikalische Gr\"o{\ss}en wie Temperatur in Grad Celsius
\end{itemize} \end{itemize}
\end{frame} \end{frame}
%------------------------------------------------------------- %-------------------------------------------------------------
\begin{frame} \begin{frame}
\frametitle{Datenskalen} \frametitle{data scales}
\framesubtitle{Absolut- oder Verh\"altnisskala (engl. ,,ratio)} \framesubtitle{absolut/ratio scale}
\begin{itemize} \begin{itemize}
\item wie Intervallskala, aber mit absolutem Nullpunkt \item like interval scale but with absolute zero
\item Beispiel: Temperatur in Kelvin, Einkommen \item example: temperature in $^\circ$K
\end{itemize} \end{itemize}
\pause \pause
\begin{emphasize}{Verh\"altnis der Skalen} \begin{emphasize}{relationsships between scales}
\begin{itemize} \begin{itemize}
\item Skalen besitzen aufsteigenden Informationsgehalt von \item scales exhibit increasing information content from nominal
Nominal- zu Absolutskala to absolute
\item Konvertierung ,,abw\"arts'' immer m\"oglich \item conversion ,,downwards'' always possible
\end{itemize} \end{itemize}
\end{emphasize} \end{emphasize}
\end{frame} \end{frame}
%------------------------------------------------------------- %-------------------------------------------------------------
\begin{frame} \begin{frame}
\frametitle{Beispiele aus Neuro-/Kognitionswissenschaften} \frametitle{examples from neuroscience and psychology}
\begin{itemize} \begin{itemize}
\item {\bf Nominalskala:}\pause \item {\bf nominal:}\pause
\begin{itemize} \begin{itemize}
\item Versuchsgruppenzugeh\"origkeit \item treatment group
\item Stimulusklasse \item stimulus class
\item Zelltyp \item cell type
\end{itemize} \end{itemize}
\item {\bf Ordinalskala:} \pause \item {\bf ordinal:} \pause
\begin{itemize} \begin{itemize}
\item Ratings \item ratings
\item Krankheitsstadien \item clinical stages of a disease
\item Zust\"ande eines Ionenkanals \item states of an ion channel
\end{itemize} \end{itemize}
\item {\bf Absolut-/Ratioskala:}\pause \item {\bf Absolut-/Ratioskala:}\pause
\begin{itemize} \begin{itemize}
\item Feuerrate \item firing rate
\item Membranpotential \item membrane potential
\item Ionenkonzentration \item ion concentration
\end{itemize} \end{itemize}
\end{itemize} \end{itemize}
\end{frame} \end{frame}
%------------------------------------------------------------- %-------------------------------------------------------------
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\subsection{Statistiken} \subsection{statistics}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%------------------------------------------------------------- %-------------------------------------------------------------
\begin{frame} \begin{frame}
\frametitle{Was ist eine (Test)-Statistik} \frametitle{What is "a statistic"?}
\begin{definition}{Teststatistik, Pr\"ufwert} \begin{definition}{statistic}
\begin{itemize} A statistic (singular) is a single measure of some attribute of a
\item Als {\em Teststatistik} bezeichnet man in der mathematischen sample (e.g., its arithmetic mean value). It is calculated by
Statistik eine Stichprobenfunktion die einer Stichprobe einen applying a function (statistical algorithm) to the values of the
Wert zuordnet (z.B. Mittelwert, Median, Standardabweichung, items of the sample, which are known together as a set of data.
...).
\source{http://en.wikipedia.org/wiki/Statistic}
\item Als {\em Pr\"ufwert} wird die Realisation einer Teststatistik
anhand einer Stichprobe bezeichnet.
\source{http://de.wikipedia.org/wiki/Teststatistik}
\end{itemize}
\end{definition} \end{definition}
\end{frame} \end{frame}
@ -297,50 +289,51 @@ Bernstein Center T\"ubingen}
\begin{frame} \begin{frame}
\frametitle{Beispiele f\"ur Teststatistiken} \frametitle{Beispiele f\"ur Teststatistiken}
\begin{itemize} \begin{itemize}
\item {\bf Nominalskala:}\pause \item {\bf nominal:}\pause
\begin{itemize} \begin{itemize}
\item Anzahl \item count
\item relative H\"aufigkeit \item relative frequency/proportion
\end{itemize} \end{itemize}
\item {\bf Ordinalskala:} \pause \item {\bf ordinal:} \pause
\begin{itemize} \begin{itemize}
\item Median \item median
\item Perzentilen \item quantile/percentile
\item Rangkorrelationskoeffizient \item rank correlation
\end{itemize} \end{itemize}
\item {\bf Absolut-/Ratioskala:}\pause \item {\bf absolute/ratio:}\pause
\begin{itemize} \begin{itemize}
\item Mittelwert \item mean
\item Varianz/ Standardabweichung \item variance/ standard deviation
\item Pearson Korrelationskoeffizient \item Pearson correlation
\end{itemize} \end{itemize}
\end{itemize} \end{itemize}
\end{frame} \end{frame}
%------------------------------------------------------------- %-------------------------------------------------------------
\begin{frame} \begin{frame}
\frametitle{\"Ubung} \frametitle{exercise}
\begin{task}{Spearman Rangkorrelationskoeffizient} \begin{task}{Spearman rank correlation}
\begin{enumerate} \begin{enumerate}
\item Benutze {\tt randi} um zwei 100-dimensionale Vektoren {\tt x,y} mit \item Use {\tt randi} to generate two 100-dimensional vectors
Zufalls-Integern zwischen $0$ und $10$ zu berechnen. {\tt x,y} of random integers between $0$ and $10$.
\item Finde heraus wie man in Matlab den Spearman \item Find out how to compute the Spearman
Rangkorrelationskoeffizient $$\rho = 1- {\frac {6 \sum rank correlation $$\rho = 1- {\frac {6 \sum
d_i^2}{n(n^2 - 1)}}$$ berechnet. $d_i = x_i - y_i$ ist die d_i^2}{n(n^2 - 1)}}$$ with Matlab. $d_i = x_i - y_i$ is the
Differenz im Rang der Datenpunkte. difference in the rank between the single data points.
\item Berechne $\rho$ zwischen $x$ und $y$, zwischen $x$ und \item Compute $\rho$ between $x$ and $y$, between $x$ and
$y^2$, zwischen $\log(x+1)$ und $y^2$. Berechne auch den $y^2$, between $\log(x+1)$ and $y^2$.
\"ublichen (Pearson) Korrelationskoeffizient zwischen diesen \item Compute the "standard" (Pearson) correlation coefficient
Werten. Was kann man beobachten und warum macht das Sinn? between these values.
\item What can you observe and why does it make sense?
\end{enumerate} \end{enumerate}
\end{task} \end{task}
\end{frame} \end{frame}
%------------------------------------------------------------- %-------------------------------------------------------------
\begin{frame}[fragile] \begin{frame}[fragile]
\frametitle{\"Ubung - L\"osung} \frametitle{solution}
\begin{solution}{Spearman Rangkorrelationskoeffizient} \begin{solution}{Spearman rank correlation }
\scriptsize \scriptsize
\begin{lstlisting} \begin{lstlisting}
>>> x = randi(10, 100, 1); >>> x = randi(10, 100, 1);
@ -358,16 +351,16 @@ ans =
ans = ans =
0.0551 0.0551
\end{lstlisting} \end{lstlisting}
Der Rangkorrelationskoeffizient \"andert sich nicht bei monotoner The rank correlation does not change under a monotone transformation
Transformation der Daten. Daher ist er f\"ur ordinale Daten of the data. Therefore, it can be used for ordinal data. The Pearson
geeignet. Der Pearson Korrelationskoeffizient ist es nicht. correlation coefficient does not have that property.
\end{solution} \end{solution}
\end{frame} \end{frame}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\section{Beschreibung und Darstellung von Daten} \section{description of data and plotting}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\subsection{Nominalskala} \subsection{nominal scale}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%------------------------------------------------------------- %-------------------------------------------------------------
\begin{frame}[fragile] \begin{frame}[fragile]
@ -403,7 +396,7 @@ set(gcf, 'PaperPosition',[0.0 0.0 11.7 9.0]);
\end{lstlisting} \end{lstlisting}
\end{frame} \end{frame}
%------------------------------------------------------------- %----------------------------------------------------------
\begin{frame}[fragile] \begin{frame}[fragile]
\frametitle{Darstellung nominaler Daten} \frametitle{Darstellung nominaler Daten}
\framesubtitle{Pie-Chart f\"ur Anzahl/ rel. H\"aufigkeit} \framesubtitle{Pie-Chart f\"ur Anzahl/ rel. H\"aufigkeit}
@ -443,6 +436,11 @@ set(gcf, 'PaperPosition',[0.0 0.0 11.7 9.0]);
\end{lstlisting} \end{lstlisting}
\end{frame} \end{frame}
%-------------------------------------------------------------
\begin{frame}[fragile]
\frametitle{Darstellung von Interval-/Absolutskala Daten}
\end{frame}
\end{document} \end{document}