diff --git a/spike_trains/exercises/psth.tex b/spike_trains/exercises/psth.tex index a4c3804..a662af7 100644 --- a/spike_trains/exercises/psth.tex +++ b/spike_trains/exercises/psth.tex @@ -14,7 +14,7 @@ %%%%% text size %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \usepackage[left=20mm,right=20mm,top=25mm,bottom=25mm]{geometry} \pagestyle{headandfoot} \header{{\bfseries\large Exercise - }}{{\bfseries\large Time-dependent firing rate}}{{\bfseries\large December, 04, 2018}} + }}{{\bfseries\large Time-dependent firing rate}}{{\bfseries\large January, 14, 2020}} \firstpagefooter{Dr. Jan Grewe}{Phone: 29 74588}{Email: jan.grewe@uni-tuebingen.de} \runningfooter{}{\thepage}{} @@ -38,23 +38,23 @@ \begin{questions} \question Plot the time-dependent firing rate of a neuron. Calculate - the firing rate from the instantaneous firing rate (based on the + the firing rate from the \emph{instantaneous firing rate} (based on the interspike interval). Use the \code{lifoustim.mat}. The dataset contains three variables. 1st the spike times in different trials, - 2nd the stimulus, and 3rd the temporal resolution. The total + 2nd the stimulus, and 3rd the temporal resolution of the recording. The total duration of each trial is 30 seconds. \begin{parts} \part{} Write a function that takes three arguments: the spike times of a single trial, the trial duration and the temporal - resolution. The function should return the time values and the - firing rate in $Hz$. + resolution. The function should return two variables: the time axis and the + time-dependent firing rate. \part{} Write a script that applies the above function to estimate - the firing rate of each trial. Plot a single individual responses - and the average response as a function of time into the same plot. - \part{} Extend your program that it saves the figure with the width of 8.5\,cm using a fontsize of 10\,pt for labels. - See Chapter 3 in the script, or browse the Matlab help for information. - \part{} Store the figure in pdf format. + the time-dependent firing rate of each trial. Plot the firing rates of the individual responses + and the average response as a function of time into the same graph. + \part{} Extend your program that it saves the figure with the width and height of 8.5\,cm using a fontsize of 10\,pt for labels. + See Chapter 3 in the script, or browse the Matlab help for more + information. Store the figure in pdf format. \end{parts} \question{} As before but use the binning method. @@ -65,11 +65,11 @@ \question{} Some trials are different than the others. \begin{parts} - \part{} Use the rasterplot to identify them. In which sense + \part{} Use a rasterplot to identify them. In which sense are they different? Save the rasterplot in pdf - format. Use the same size as above and make sure it is properly labeled. - \part{} Identify the trials in which the spike count - deviates more than $2\sigma$ from the average. + format. Use the same figure specifications as above and make sure it is properly labeled. + \part{} Identify those trials in which the spike count + deviates more than $2\sigma$ (twice the standard deviation) from the average. \end{parts} \end{questions}