diff --git a/projects/README b/projects/README new file mode 100644 index 0000000..beca3f5 --- /dev/null +++ b/projects/README @@ -0,0 +1,70 @@ +project_adaptation_fit +OK + +project_eod +Needs to be checked! + +project_eyetracker +OK + +project_fano_slope +OK + +project_fano_test +OK + +project_fano_time +OK + +project_ficurves +OK + +project_input_resistance +What is the problem with this project? + +project_isicorrelations +Need to program a solution! + +project_isipdffit +Too technical + +project_lif +OK + +project_mutualinfo +OK + +project_noiseficurves +OK + +project_numbers +We might add some more involved statistical analysis + +project_pca_natural_images +Needs PCA... + +project_photoreceptor +OK - text needs to be improved +Maybe also add how responses are influenced by unstable resting potential +Maybe more cells... + +project_populationvector +OK + +project_qvalues +Interesting! But needs solution. + +project_random_walk +Improve it! Provide code exmaples for plotting world and making movies + +project_serialcorrelation +OK + +project_spectra +Needs improvements and a solution + +project_stimulus_reconstruction +OK Fix equation? + +project_vector_strength +OK Maybe add something for explainiong the vector strength (average unit vector). \ No newline at end of file diff --git a/projects/header.tex b/projects/header.tex index 690de17..ae6f10a 100644 --- a/projects/header.tex +++ b/projects/header.tex @@ -7,7 +7,7 @@ %%%%% layout %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \usepackage[left=20mm,right=20mm,top=25mm,bottom=25mm]{geometry} \pagestyle{headandfoot} -\header{\textbf{\large Scientific Computing Project: \ptitle}}{}{\textbf{\large January 18th, 2018}} +\header{\textbf{\large Scientific Computing Project:}}{}{\textbf{\large \ptitle}} \runningfooter{}{\thepage}{} \setlength{\baselineskip}{15pt} diff --git a/projects/project_fano_slope/fano_slope.tex b/projects/project_fano_slope/fano_slope.tex index a1f6c89..fde346d 100644 --- a/projects/project_fano_slope/fano_slope.tex +++ b/projects/project_fano_slope/fano_slope.tex @@ -36,7 +36,6 @@ stimulus could happen to be lower than the number of spikes evoked by the smaller stimulus. - The central questions of this project are: \begin{itemize} \item How can an upstream neuron discriminate two stimuli based @@ -45,7 +44,7 @@ \end{itemize} The neuron is implemented in the file \texttt{lifboltzmannspikes.m}. - Call it with the following parameters: + Call it with the following parameters:\vspace{-5ex} \begin{lstlisting} trials = 10; tmax = 50.0; @@ -76,9 +75,7 @@ spikes = lifboltzmanspikes(trials, input, tmax, gain); Plot the tuning curve for four different neurons that differ in their \texttt{gain} property. Use 0.1, 0.2, 0.5 and 1 as values - for the \texttt{gain} parameter. - - Why is this parameter called 'gain'? + for the \texttt{gain} parameter. Why is this parameter called 'gain'? \part Show two raster plots for the responses to two different stimuli with $I_1=10$ and $I_2=11$. Set the gain of the neuron to @@ -102,7 +99,7 @@ spikes = lifboltzmanspikes(trials, input, tmax, gain); that quantifies how well the two stimuli can be distinguished based on the spike counts. Plot the dependence of this measure as a function of the gain of the neuron. - +% For which gains can the two stimuli perfectly discriminated? \underline{Hint:} A possible readout is to set a threshold diff --git a/projects/project_fano_test/fano_test.tex b/projects/project_fano_test/fano_test.tex index 2e488e2..e107729 100644 --- a/projects/project_fano_test/fano_test.tex +++ b/projects/project_fano_test/fano_test.tex @@ -25,7 +25,7 @@ \part Plot the spike counts of both neurons appropriately. \part Use {\em Eden, U. T., \& Kramer, M. (2010). Drawing inferences from Fano factor calculations. Journal of - neuroscience methods, 190(1), 149--152} to construct a test that + Neuroscience Methods, 190(1), 149--152} to construct a test that uses the Fano factor as test statistic and tests against the Null hypothesis that the spike counts come from a Poisson process. \part Implement the test and use it on the data above. diff --git a/projects/project_lif/lif.tex b/projects/project_lif/lif.tex index eab4b7a..72a36ea 100644 --- a/projects/project_lif/lif.tex +++ b/projects/project_lif/lif.tex @@ -115,7 +115,8 @@ time = [0.0:dt:tmax]; % t_i r = \frac{n-1}{t_n - t_1} \end{equation} What do you observe? Does the firing rate encode the frequency of - the stimulus? + the stimulus? Look at the spike trains in response the sine waves + to figure out what is going on. \end{parts} \end{questions}