diff --git a/projects/disclaimer.tex b/projects/disclaimer.tex index 6397967..e328d05 100644 --- a/projects/disclaimer.tex +++ b/projects/disclaimer.tex @@ -8,8 +8,8 @@ \vspace{1ex} The {\bf code} and the {\bf presentation} should be uploaded to - ILIAS at latest on Thursday, November 5th, 13:00h. The - presentations start on Thursday 13:00h. Please hand in your + ILIAS at latest on Thursday, February XXXXth, 13:00h. The + presentations start on XXXXXXX. Please hand in your presentation as a pdf file. Bundle everything (the pdf and the code) into a {\em single} zip-file. @@ -22,7 +22,7 @@ {\em figures} that you use in your slides. The figures should follow the guidelines for proper plotting as discussed in the course. The code should be properly commented - and comprehensible by third persons (use proper and consistent + and comprehensible by a third persons (use proper and consistent variable and function names). \vspace{1ex} \textbf{Please write your name and matriculation diff --git a/projects/project_photoreceptor/photoreceptor.tex b/projects/project_photoreceptor/photoreceptor.tex new file mode 100644 index 0000000..a8daa78 --- /dev/null +++ b/projects/project_photoreceptor/photoreceptor.tex @@ -0,0 +1,62 @@ +\documentclass[addpoints,11pt]{exam} +\usepackage{url} +\usepackage{color} +\usepackage{hyperref} + +\pagestyle{headandfoot} +\runningheadrule +\firstpageheadrule +\firstpageheader{Scientific Computing}{Project Assignment}{WS 2016/17} +%\runningheader{Homework 01}{Page \thepage\ of \numpages}{23. October 2014} +\firstpagefooter{}{}{{\bf Supervisor:} Jan Grewe} +\runningfooter{}{}{} +\pointsinmargin +\bracketedpoints + +%\printanswers +%\shadedsolutions + + +\begin{document} +%%%%%%%%%%%%%%%%%%%%% Submission instructions %%%%%%%%%%%%%%%%%%%%%%%%% +\sffamily +% \begin{flushright} +% \gradetable[h][questions] +% \end{flushright} + +\begin{center} + \input{../disclaimer.tex} +\end{center} + +%%%%%%%%%%%%%% Questions %%%%%%%%%%%%%%%%%%%%%%%%% +\section*{Analysis of insect photoreceptor data.} +In this project you will analyse data from intracellular recordings of +a fly photoreceptor. A R~1--6 photoreceptor was intracellularly +recorded and was stimulated with a light stimulus. + +\begin{questions} + \question{} The accompanying dataset (photoreceptor\_data.zip) + contains seven mat files. Each of these holds the data from one + stimulus intensity. In each file are three variables. (i) + \textit{voltage} a matrix with the recorded membrane potential from + 10 consecutive trials, (ii) \textit{time} a matrix with the + time-axis for each trial, and (iii) \textit{trace\_meta} a structure + that stores several metadata. This is the place where you find the + \emph{amplitude}, that is the voltage that drives the light + stimulus, i.e. the light-intensity. + + \begin{parts} + \part{} Create a plot of the raw data. Plot the average response as + a function of time. This plot should also show the + across-trial variability.\\[0.5ex] + \part{} You will notice that the responses have three main parts, a + pre-stimulus phase, the phase in which the light was on, and finally a + post-stimulus time. Create an characteristic curve that plots the + response strength as a function of the stimulus intensity for the ``onset'' + and the ``steady state'' phases.\\[0.5ex] + \part{} You may also decide to analyze the post-stimulus response in some + more detail. + \end{parts} +\end{questions} + +\end{document}