some fixes
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@ -5,7 +5,7 @@
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\exercisechapter{Resampling methods}
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\entermde{Resampling methoden}{Resampling methods} are applied to
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\entermde{Resampling-Methoden}{Resampling methods} are applied to
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generate distributions of statistical measures via resampling of
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existing samples. Resampling offers several advantages:
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\begin{itemize}
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@ -80,10 +80,10 @@ distribution of average values around the true mean of the population
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Alternatively, we can use \enterm{bootstrapping}
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(\determ[Bootstrap!Verfahren]{Bootstrapverfahren}) to generate new
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samples from one set of measurements
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(\entermde{Resampling}{resampling}). From these bootstrapped samples
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we compute the desired statistical measure and estimate their
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distribution (\entermde{Bootstrap!Verteilung}{bootstrap distribution},
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samples from one set of measurements by means of resampling. From
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these bootstrapped samples we compute the desired statistical measure
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and estimate their distribution
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(\entermde{Bootstrap!Verteilung}{bootstrap distribution},
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\subfigref{bootstrapsamplingdistributionfig}{c}). Interestingly, this
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distribution is very similar to the sampling distribution regarding
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its width. The only difference is that the bootstrapped values are
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@ -24,7 +24,7 @@ for i in range(nresamples) :
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musrs.append(np.mean(rng.randn(nsamples)))
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hmusrs, _ = np.histogram(musrs, bins, density=True)
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fig, ax = plt.subplots(figsize=cm_size(figure_width, 1.05*figure_height))
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fig, ax = plt.subplots(figsize=cm_size(figure_width, 1.1*figure_height))
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fig.subplots_adjust(**adjust_fs(left=4.0, bottom=2.7, right=1.5))
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ax.set_xlabel('Mean')
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ax.set_xlim(-0.4, 0.4)
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@ -362,7 +362,8 @@ too large, the algorithm does not converge to the minimum of the cost
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function (try it!). At medium values it oscillates around the minimum
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but might nevertheless converge. Only for sufficiently small values
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(here $\epsilon = 0.00001$) does the algorithm follow the slope
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downwards towards the minimum.
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downwards towards the minimum. Change $\epsilon$ by factors of ten to
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adapt it to a specific problem.
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The terminating condition on the absolute value of the gradient
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influences how often the cost function is evaluated. The smaller the
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@ -560,7 +561,7 @@ For testing our new function we need to implement the power law
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\end{exercise}
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Now let's use the new gradient descent function to fit a power law to
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our tiger data-set (\figref{powergradientdescentfig}):
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our tiger data-set:
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\begin{exercise}{plotgradientdescentpower.m}{}
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Use the function \varcode{gradientDescent()} to fit the
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@ -573,6 +574,15 @@ our tiger data-set (\figref{powergradientdescentfig}):
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data together with the best fitting power-law \eqref{powerfunc}.
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\end{exercise}
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Note that in our specific example on tiger sizes and weights the
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simulated data look on a first glance like being linearly related
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(\figref{cubicdatafig}). The true cubic relation between weights and
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sizes is not that obvious, because of the limited range of tiger
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sizes. Nevertheless, the cost function has a minimum at the bottom of
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a valley that is very narrow in the direction of the expontent
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(\figref{powergradientdescentfig}). The exponent of about three is
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thus clearly defined by the data.
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\section{Fitting non-linear functions to data}
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@ -650,6 +660,8 @@ however, is not a fixed function. It may change in time by changing
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abiotic and biotic environmental conditions, making this a very
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complex but also interesting optimization problem.
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\subsection{Optimal design of neural systems}
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How should a neuron or neural network be designed? As a particular
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aspect of the general evolution of a species, this is a fundamental
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question in the neurosciences. Maintaining a neural system is
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