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Merge branch 'master' of raven:scientificComputing

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This commit is contained in:
Jan Benda 2015-11-24 13:26:22 +01:00
commit 55495d2d71
8 changed files with 22 additions and 22 deletions
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4
bootstrap/lecture/bootstrap-chapter.tex
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@ -5,8 +5,8 @@
\lstset{inputpath=../code}
\graphicspath{{figures/}}
\setcounter{page}{81}
\setcounter{chapter}{4}
\setcounter{page}{}
\setcounter{chapter}{-1}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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4
likelihood/lecture/likelihood-chapter.tex
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@ -5,8 +5,8 @@
\lstset{inputpath=../code}
\graphicspath{{figures/}}
\setcounter{page}{101}
\setcounter{chapter}{6}
\setcounter{page}{}
\setcounter{chapter}{-1}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

2
pointprocesses/lecture/isihexamples.py
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@ -98,4 +98,4 @@ plotisih(ax, isis(inhspikes))
plt.tight_layout()
plt.savefig('isihexamples.pdf')
plt.show()
plt.close()

6
pointprocesses/lecture/pointprocessscetchA.eps
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@ -1,7 +1,7 @@
%!PS-Adobe-2.0 EPSF-2.0
%%Title: pointprocessscetchA.tex
%%Creator: gnuplot 4.6 patchlevel 4
%%CreationDate: Sun Nov 22 12:40:02 2015
%%CreationDate: Mon Nov 23 13:45:26 2015
%%DocumentFonts:
%%BoundingBox: 50 50 373 135
%%EndComments
@ -430,10 +430,10 @@ SDict begin [
/Title (pointprocessscetchA.tex)
/Subject (gnuplot plot)
/Creator (gnuplot 4.6 patchlevel 4)
/Author (jan)
/Author (grewe)
% /Producer (gnuplot)
% /Keywords ()
/CreationDate (Sun Nov 22 12:40:02 2015)
/CreationDate (Mon Nov 23 13:45:26 2015)
/DOCINFO pdfmark
end
} ifelse

6
pointprocesses/lecture/pointprocessscetchB.eps
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@ -1,7 +1,7 @@
%!PS-Adobe-2.0 EPSF-2.0
%%Title: pointprocessscetchB.tex
%%Creator: gnuplot 4.6 patchlevel 4
%%CreationDate: Sun Nov 22 12:40:02 2015
%%CreationDate: Mon Nov 23 13:46:59 2015
%%DocumentFonts:
%%BoundingBox: 50 50 373 237
%%EndComments
@ -430,10 +430,10 @@ SDict begin [
/Title (pointprocessscetchB.tex)
/Subject (gnuplot plot)
/Creator (gnuplot 4.6 patchlevel 4)
/Author (jan)
/Author (grewe)
% /Producer (gnuplot)
% /Keywords ()
/CreationDate (Sun Nov 22 12:40:02 2015)
/CreationDate (Mon Nov 23 13:46:59 2015)
/DOCINFO pdfmark
end
} ifelse

2
pointprocesses/lecture/rasterexamples.py
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@ -83,4 +83,4 @@ ax.eventplot(inhspikes, colors=[[0, 0, 0]], linelength=0.8)
plt.tight_layout()
plt.savefig('rasterexamples.pdf')
plt.show()
plt.close()

16
pointprocesses/lecture/sta.py
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@ -43,12 +43,12 @@ def plot_results(sta_time, st_average, stim_time, s_est, stimulus, duration, dt)
fig = plt.gcf()
fig.set_size_inches(15, 5)
fig.subplots_adjust(left=0.075, bottom=0.12, top=0.92, right=0.975)
fig.subplots_adjust(left=0.08, bottom=0.15, top=0.9, right=0.975)
fig.set_facecolor("white")
sta_ax.plot(sta_time * 1000, st_average, color="dodgerblue", lw=2.)
sta_ax.set_xlabel("time [ms]", fontsize=12)
sta_ax.set_ylabel("stimulus", fontsize=12)
sta_ax.set_xlabel("time [ms]", fontsize=20)
sta_ax.set_ylabel("stimulus", fontsize=20)
sta_ax.set_xlim([-50, 50])
# sta_ax.xaxis.grid('off')
sta_ax.spines["right"].set_visible(False)
@ -57,7 +57,7 @@ def plot_results(sta_time, st_average, stim_time, s_est, stimulus, duration, dt)
sta_ax.xaxis.set_ticks_position('bottom')
sta_ax.spines["bottom"].set_linewidth(2.0)
sta_ax.spines["left"].set_linewidth(2.0)
sta_ax.tick_params(direction="out", width=2.0)
sta_ax.tick_params(direction="out", width=2.0, labelsize=18)
ylim = sta_ax.get_ylim()
xlim = sta_ax.get_xlim()
@ -65,11 +65,11 @@ def plot_results(sta_time, st_average, stim_time, s_est, stimulus, duration, dt)
sta_ax.plot([0., 0.], list(ylim), zorder=1, color='darkgray', ls='--', lw=0.75)
sta_ax.set_xlim(list(xlim))
sta_ax.set_ylim(list(ylim))
sta_ax.text(-0.225, 1.05, "A", transform=sta_ax.transAxes, size=14)
sta_ax.text(-0.25, 1.04, "A", transform=sta_ax.transAxes, size=24)
stim_ax.plot(stim_time * 1000, stimulus[:,1], label='stimulus', color='dodgerblue', lw=2.)
stim_ax.plot(stim_time * 1000, s_est, label='reconstruction', color='red', lw=2)
stim_ax.set_xlabel('time[ms]', fontsize=12)
stim_ax.set_xlabel('time[ms]', fontsize=20)
stim_ax.set_xlim([0.0, 250])
stim_ax.set_ylim([-1., 1.])
stim_ax.legend()
@ -80,8 +80,8 @@ def plot_results(sta_time, st_average, stim_time, s_est, stimulus, duration, dt)
stim_ax.xaxis.set_ticks_position('bottom')
stim_ax.spines["bottom"].set_linewidth(2.0)
stim_ax.spines["left"].set_linewidth(2.0)
stim_ax.tick_params(direction="out", width=2.0)
stim_ax.text(-0.075, 1.05, "B", transform=stim_ax.transAxes, size=14)
stim_ax.tick_params(direction="out", width=2.0, labelsize=18)
stim_ax.text(-0.1, 1.04, "B", transform=stim_ax.transAxes, size=24)
fig.savefig("sta.pdf")
plt.close()

4
regression/lecture/regression-chapter.tex
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@ -5,8 +5,8 @@
\lstset{inputpath=../code}
\graphicspath{{figures/}}
\setcounter{page}{89}
\setcounter{chapter}{5}
\setcounter{page}{}
\setcounter{chapter}{-1}
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