move plotting stuff to own folder
70
plotting/lecture/Makefile
Normal file
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|||||||
|
BASENAME=plotting
|
||||||
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|
||||||
|
PYFILES=$(wildcard *.py)
|
||||||
|
PYPDFFILES=$(PYFILES:.py=.pdf)
|
||||||
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|
||||||
|
GPTFILES=$(wildcard *.gpt)
|
||||||
|
GPTTEXFILES=$(GPTFILES:.gpt=.tex)
|
||||||
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|
||||||
|
|
||||||
|
all: pdf slides thumbs
|
||||||
|
|
||||||
|
# script:
|
||||||
|
pdf : $(BASENAME)-chapter.pdf
|
||||||
|
$(BASENAME)-chapter.pdf : $(BASENAME)-chapter.tex $(BASENAME).tex $(GPTTEXFILES) $(PYPDFFILES)
|
||||||
|
pdflatex -interaction=scrollmode $< | tee /dev/stderr | fgrep -q "Rerun to get cross-references right" && pdflatex -interaction=scrollmode $< || true
|
||||||
|
|
||||||
|
|
||||||
|
# slides:
|
||||||
|
slides: $(BASENAME)-slides.pdf
|
||||||
|
$(BASENAME)-slides.pdf : $(BASENAME)-slides.tex $(GPTTEXFILES) $(PYPDFFILES)
|
||||||
|
pdflatex -interaction=scrollmode $< | tee /dev/stderr | fgrep -q "Rerun to get cross-references right" && pdflatex -interaction=scrollmode $< || true
|
||||||
|
|
||||||
|
# thumbnails:
|
||||||
|
thumbs: $(BASENAME)-handout.pdf
|
||||||
|
$(BASENAME)-handout.pdf: $(BASENAME)-slides.tex $(GPTTEXFILES)
|
||||||
|
sed -e 's/setboolean{presentation}{true}/setboolean{presentation}{false}/; s/usepackage{crop}/usepackage[frame]{crop}/' $< > thumbsfoils.tex
|
||||||
|
pdflatex thumbsfoils | tee /dev/stderr | fgrep -q "Rerun to get cross-references right" && pdflatex thumbsfoils || true
|
||||||
|
pdfnup --nup 2x4 --no-landscape --paper a4paper --trim "-1cm -1cm -1cm -1cm" --outfile $@ thumbsfoils.pdf # 1-19
|
||||||
|
rm thumbsfoils.*
|
||||||
|
|
||||||
|
watchpdf :
|
||||||
|
while true; do ! make -q pdf && make pdf; sleep 0.5; done
|
||||||
|
|
||||||
|
watchslides :
|
||||||
|
while true; do ! make -q slides && make slides; sleep 0.5; done
|
||||||
|
|
||||||
|
# python plots:
|
||||||
|
$(PYPDFFILES) : %.pdf: %.py
|
||||||
|
python $<
|
||||||
|
|
||||||
|
# gnuplot plots:
|
||||||
|
$(GPTTEXFILES) : %.tex: %.gpt whitestyles.gp
|
||||||
|
gnuplot whitestyles.gp $<
|
||||||
|
epstopdf $*.eps
|
||||||
|
|
||||||
|
|
||||||
|
clean :
|
||||||
|
rm -f *~
|
||||||
|
rm -f $(BASENAME).aux $(BASENAME).log
|
||||||
|
rm -f $(BASENAME)-chapter.aux $(BASENAME)-chapter.log $(BASENAME)-chapter.out
|
||||||
|
rm -f $(BASENAME)-slides.aux $(BASENAME)-slides.log $(BASENAME)-slides.out $(BASENAME)-slides.toc $(BASENAME)-slides.nav $(BASENAME)-slides.snm $(BASENAME)-slides.vrb
|
||||||
|
rm -f $(PYPDFFILES) $(GPTTEXFILES)
|
||||||
|
|
||||||
|
cleanall : clean
|
||||||
|
rm -f $(BASENAME)-chapter.pdf $(BASENAME)-slides.pdf $(BASENAME)-handout.pdf
|
||||||
|
|
||||||
|
|
||||||
|
help :
|
||||||
|
@echo -e \
|
||||||
|
"make pdf: make the pdf file of the script.\n"\
|
||||||
|
"make slides: make the pdf file of the slides.\n"\
|
||||||
|
"make thumbs: make color thumbnails of the talk.\n"\
|
||||||
|
"make watchpdf: make the pdf file of the script\n"\
|
||||||
|
" whenever the tex file is modified.\n"\
|
||||||
|
"make watchpdf: make the pdf file of the slides\n"\
|
||||||
|
" whenever the tex file is modified.\n"\
|
||||||
|
"make clean: remove all intermediate files,\n"\
|
||||||
|
" just leave the source files and the final .pdf files.\n"\
|
||||||
|
"make cleanup: remove all intermediate files as well as\n"\
|
||||||
|
" the final .pdf files.\n"\
|
61
plotting/lecture/beamercolorthemetuebingen.sty
Normal file
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|
|||||||
|
% Copyright 2007 by Till Tantau
|
||||||
|
%
|
||||||
|
% This file may be distributed and/or modified
|
||||||
|
%
|
||||||
|
% 1. under the LaTeX Project Public License and/or
|
||||||
|
% 2. under the GNU Public License.
|
||||||
|
%
|
||||||
|
% See the file doc/licenses/LICENSE for more details.
|
||||||
|
|
||||||
|
\usepackage{color}
|
||||||
|
\definecolor{karminrot}{RGB}{165,30,55}
|
||||||
|
\definecolor{gold}{RGB}{180,160,105}
|
||||||
|
\definecolor{anthrazit}{RGB}{50 ,65 ,75 }
|
||||||
|
|
||||||
|
\mode<presentation>
|
||||||
|
|
||||||
|
\setbeamercolor*{normal text}{fg=anthrazit,bg=white}
|
||||||
|
\setbeamercolor*{alerted text}{fg=anthrazit}
|
||||||
|
\setbeamercolor*{example text}{fg=anthrazit}
|
||||||
|
\setbeamercolor*{structure}{fg=gold,bg=karminrot}
|
||||||
|
|
||||||
|
\providecommand*{\beamer@bftext@only}{%
|
||||||
|
\relax
|
||||||
|
\ifmmode
|
||||||
|
\expandafter\beamer@bftext@warning
|
||||||
|
\else
|
||||||
|
\expandafter\bfseries
|
||||||
|
\fi
|
||||||
|
}
|
||||||
|
\providecommand*{\beamer@bftext@warning}{%
|
||||||
|
\ClassWarning{beamer}
|
||||||
|
{Cannot use bold for alerted text in math mode}%
|
||||||
|
}
|
||||||
|
|
||||||
|
\setbeamerfont{alerted text}{series=\beamer@bftext@only}
|
||||||
|
|
||||||
|
\setbeamercolor{palette primary}{fg=karminrot,bg=white}
|
||||||
|
\setbeamercolor{palette secondary}{fg=gold,bg=white}
|
||||||
|
\setbeamercolor{palette tertiary}{fg=anthrazit,bg=white}
|
||||||
|
\setbeamercolor{palette quaternary}{fg=black,bg=white}
|
||||||
|
|
||||||
|
\setbeamercolor{sidebar}{bg=karminrot!100}
|
||||||
|
|
||||||
|
\setbeamercolor{palette sidebar primary}{fg=karminrot}
|
||||||
|
\setbeamercolor{palette sidebar secondary}{fg=karminrot}
|
||||||
|
\setbeamercolor{palette sidebar tertiary}{fg=karminrot}
|
||||||
|
\setbeamercolor{palette sidebar quaternary}{fg=karminrot}
|
||||||
|
|
||||||
|
\setbeamercolor{item projected}{fg=black,bg=black!20}
|
||||||
|
|
||||||
|
\setbeamercolor*{block body}{}
|
||||||
|
\setbeamercolor*{block body alerted}{}
|
||||||
|
\setbeamercolor*{block body example}{}
|
||||||
|
\setbeamercolor*{block title}{parent=structure}
|
||||||
|
\setbeamercolor*{block title alerted}{parent=alerted text}
|
||||||
|
\setbeamercolor*{block title example}{parent=example text}
|
||||||
|
|
||||||
|
\setbeamercolor*{titlelike}{parent=structure}
|
||||||
|
|
||||||
|
\mode
|
||||||
|
<all>
|
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17
plotting/lecture/plotting-chapter.tex
Normal file
@ -0,0 +1,17 @@
|
|||||||
|
\documentclass[12pt]{report}
|
||||||
|
|
||||||
|
\input{../../header}
|
||||||
|
|
||||||
|
\lstset{inputpath=../code}
|
||||||
|
|
||||||
|
\graphicspath{{images/}}
|
||||||
|
|
||||||
|
|
||||||
|
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
|
||||||
|
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
|
||||||
|
\begin{document}
|
||||||
|
|
||||||
|
\include{psth_sta}
|
||||||
|
|
||||||
|
\end{document}
|
||||||
|
|
11
plotting/lecture/plotting.tex
Normal file
@ -0,0 +1,11 @@
|
|||||||
|
\chapter{\tr{Data plotting}{Graphische Darstellung von Daten}}
|
||||||
|
|
||||||
|
\section{Graphische Darstellung von Daten}
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
\begin{figure}
|
||||||
|
\includegraphics[width=0.9\columnwidth]{convincing}
|
||||||
|
\caption{Die Folgen schlecht annotierter
|
||||||
|
Plots. \url{www.xkcd.com}} \label{xkcdplotting}
|
||||||
|
\end{figure}
|
26
programming/code/simplerandomwalk.m
Normal file
@ -0,0 +1,26 @@
|
|||||||
|
num_runs = 10;
|
||||||
|
max_steps = 1000;
|
||||||
|
|
||||||
|
positions = zeros(max_steps, num_runs);
|
||||||
|
|
||||||
|
for run = 1:num_runs
|
||||||
|
for step = 2:max_steps
|
||||||
|
x = randn(1);
|
||||||
|
if x < 0
|
||||||
|
positions(step, run) = positions(step-1, run) + 1;
|
||||||
|
elseif x > 0
|
||||||
|
positions(step, run) = positions(step-1, run) - 1;
|
||||||
|
end
|
||||||
|
end
|
||||||
|
end
|
||||||
|
|
||||||
|
figure()
|
||||||
|
hold on
|
||||||
|
for run = 1:num_runs
|
||||||
|
plot(1:max_steps, positions(:, run))
|
||||||
|
end
|
||||||
|
xlabel('Number of steps')
|
||||||
|
ylabel('Position')
|
||||||
|
box off
|
||||||
|
|
||||||
|
|
Before ![]() (image error) Size: 18 KiB |
29
programming/lectures/logicalIndexingTime.py
Normal file
@ -0,0 +1,29 @@
|
|||||||
|
import matplotlib.pyplot as plt
|
||||||
|
import numpy as np
|
||||||
|
from IPython import embed
|
||||||
|
time = np.arange(0.,10., 0.001)
|
||||||
|
x = np.random.randn(len(time))
|
||||||
|
selection = x[(time > 5.) & (time < 6.)]
|
||||||
|
|
||||||
|
fig = plt.figure()
|
||||||
|
fig.set_facecolor("white")
|
||||||
|
fig.set_size_inches(5.5, 2.5)
|
||||||
|
|
||||||
|
ax = fig.add_subplot(111)
|
||||||
|
ax.plot(time, x, label="data", lw=.5)
|
||||||
|
ax.plot(time[(time > 5.) & (time < 6.)], selection, color='r', lw=0.5, label="selection")
|
||||||
|
ax.spines["right"].set_visible(False)
|
||||||
|
ax.spines["top"].set_visible(False)
|
||||||
|
ax.yaxis.set_ticks_position('left')
|
||||||
|
ax.xaxis.set_ticks_position('bottom')
|
||||||
|
ax.xaxis.linewidth=1.5
|
||||||
|
ax.yaxis.linewidth=1.5
|
||||||
|
ax.tick_params(direction="out", width=1.25)
|
||||||
|
ax.tick_params(direction="out", width=1.25)
|
||||||
|
ax.set_xlabel("time [s]")
|
||||||
|
ax.set_ylabel("intensity")
|
||||||
|
ax.legend(fontsize=8)
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig("images/logicalIndexingTime.pdf")
|
||||||
|
|
||||||
|
|