From 2a65c1c1cc151014b35703a0dac0cc0b05330099 Mon Sep 17 00:00:00 2001
From: Jan Benda <jan.benda@uni-tuebingen.de>
Date: Sat, 2 Jan 2021 12:02:11 +0100
Subject: [PATCH] added a few more general notes

---
 regression/lecture/regression-chapter.tex |  2 ++
 scientificcomputing-script.tex            | 13 ++++++++-----
 2 files changed, 10 insertions(+), 5 deletions(-)

diff --git a/regression/lecture/regression-chapter.tex b/regression/lecture/regression-chapter.tex
index cfc984b..05c049a 100644
--- a/regression/lecture/regression-chapter.tex
+++ b/regression/lecture/regression-chapter.tex
@@ -21,6 +21,8 @@
 \subsection{Notes}
 \begin{itemize}
 \item Fig 8.2 right: this should be a chi-squared distribution with one degree of freedom!
+\item Gradient ascent is used by bacteria and worms (and others) to
+  approach food sources along chemical and temperature gradients (using biased random walks).
 \end{itemize}
 
 \subsection{New chapter: non-linear fits}
diff --git a/scientificcomputing-script.tex b/scientificcomputing-script.tex
index ee064c9..8df08d8 100644
--- a/scientificcomputing-script.tex
+++ b/scientificcomputing-script.tex
@@ -51,9 +51,10 @@
 %   We therefore expose you to some mathematical equations 
 %   that do not go beyond what you learned at school.
 % - most concepts are also quite relevant for the brain itself!
+%   The brain also needs to analyse the data coming in from the senses.
 % - modern approaches:
 %   * open source science (open data, open code, open algorithmns in contrast 
-%     to closed source license models)
+%     to closed source license models), FAIR
 %   * knowledge is freedom ...
 %   * do not consume what companies offer you but know what you want and implement it
 %   * python as a modern and popular programming language in modern science
@@ -75,7 +76,7 @@
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 \part{Data analysis}
-%\part{Basic statistics}
+%\subpart{Basic statistics}
 % With an intro saying statistical tests are overrated!
 
 % add chapter on stochastic simulations (draw random numbers, draw random functions)
@@ -97,7 +98,7 @@
 
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%\part{Time series}
+%\subpart{Time series}
 
 % add chapter on simulations of dynamical systems/time series (euler
 % forward, odeint, iterated maps, dynamical system, bifurcations?)
@@ -124,7 +125,7 @@
 
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%\part{Machine learning}
+%\subpart{Machine learning}
 
 % add chapters on linear algebra, PCA, clustering, see linearalgebra/
 
@@ -135,6 +136,7 @@
 
 % add chapter on Markup and LaTeX -> see latex/
 % with an introduction on mark-up in general, an outlook to markdown, html, xml, jason, yaml
+% make notes, data, and texts understandable by computers!
 
 % Makefile
 % distributed computing (ssh and grid engines)
@@ -142,7 +144,8 @@
 % see replicability/ :
 % version control (git and github) only put source files into repository!
 % data handling (structure, storage (rsync), backup, data bases)
-% data annotation, meta data
+% data annotation, meta data, FAIR
+
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 \appendix