From 21c1de04776ff06f317d57d39951c3c78d92c63c Mon Sep 17 00:00:00 2001 From: Jan Grewe Date: Mon, 3 Dec 2018 21:10:02 +0100 Subject: [PATCH] some fixes to firing rate exercise --- spike_trains/exercises/psth.tex | 20 +++++++++----------- 1 file changed, 9 insertions(+), 11 deletions(-) diff --git a/spike_trains/exercises/psth.tex b/spike_trains/exercises/psth.tex index 2722e9e..a4c3804 100644 --- a/spike_trains/exercises/psth.tex +++ b/spike_trains/exercises/psth.tex @@ -14,7 +14,7 @@ %%%%% text size %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \usepackage[left=20mm,right=20mm,top=25mm,bottom=25mm]{geometry} \pagestyle{headandfoot} \header{{\bfseries\large Exercise - }}{{\bfseries\large Time-dependent firing rate}}{{\bfseries\large December, 12, 2017}} + }}{{\bfseries\large Time-dependent firing rate}}{{\bfseries\large December, 04, 2018}} \firstpagefooter{Dr. Jan Grewe}{Phone: 29 74588}{Email: jan.grewe@uni-tuebingen.de} \runningfooter{}{\thepage}{} @@ -42,7 +42,7 @@ interspike interval). Use the \code{lifoustim.mat}. The dataset contains three variables. 1st the spike times in different trials, 2nd the stimulus, and 3rd the temporal resolution. The total - duration of each trial amounts to 30 seconds. + duration of each trial is 30 seconds. \begin{parts} \part{} Write a function that takes three arguments: the spike @@ -52,10 +52,8 @@ \part{} Write a script that applies the above function to estimate the firing rate of each trial. Plot a single individual responses and the average response as a function of time into the same plot. - \part{} Extend your program that it saves the figure in a format - according to the rules given by the \textit{Journal of - Neuroscience}. This relates to the figure size and the - fontsizes. + \part{} Extend your program that it saves the figure with the width of 8.5\,cm using a fontsize of 10\,pt for labels. + See Chapter 3 in the script, or browse the Matlab help for information. \part{} Store the figure in pdf format. \end{parts} @@ -63,14 +61,14 @@ \question{} Extend your script that it also plots the interspike interval histogram and the distribution of spike counts into - separate figures. Save the figures to file using the pdf format. + separate figures. Save the figures to file using the pdf format. You may also choose to use subplots instead of individual figures. - \question{} Some trials are different from the others. + \question{} Some trials are different than the others. \begin{parts} \part{} Use the rasterplot to identify them. In which sense - are they different from the others? Save the rasterplot in pdf - format. - \part{} Identify those trial in which the total spike count + are they different? Save the rasterplot in pdf + format. Use the same size as above and make sure it is properly labeled. + \part{} Identify the trials in which the spike count deviates more than $2\sigma$ from the average. \end{parts} \end{questions}