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nicer nice plot with data and script

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Jan Grewe 2015-11-16 10:23:55 +01:00
parent 031dfc2dcb
commit 168fdbe902
5 changed files with 33 additions and 20 deletions
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30
plotting/code/automatic_plot.m Normal file
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@ -0,0 +1,30 @@
clear all
close all
load('pyramidal_response.mat')
threshold = 20; % mV
figure()
hold on
plot(time, neuronal_data, 'color', [0.2 0.5 0.7], 'linewidth', 1., ...
'displayname', 'membrane voltage')
plot(spikes, ones(size(spikes)) .* threshold, 'ro', 'markersize', 5, ...
'displayname', 'spike times')
line([time(1) time(end)], [threshold threshold], 'linestyle', '--', ...
'linewidth', 0.75, 'color', [0.5 0.5 0.9], 'displayname', 'threshold')
xlabel('time [s]', 'fontname', 'Times', 'fontsize', 11)
ylabel('potential [mV]', 'fontname', 'Times', 'fontsize', 11)
title('ELL pyramidal neuron', 'fontname', 'Times', 'fontsize', 12)
ylim([0 35])
xlim([0 2.25])
box('off')
l = legend(gca,'show');
set(l,'Location','northwest', 'Fontsize', 7, 'LineWidth', 1.);
set(gca, 'XMinorTick','on','yMinorTick','on')
set(gca, 'TickDir','out', 'linewidth', 1.5, 'fontname', 'Times', ...
'fontsize', 11)
set(gcf, 'PaperUnits', 'centimeters', 'PaperSize', [15 7.5]);
set(gcf, 'PaperPosition',[0.0 0.0 15, 7.5], 'Color', 'white')
saveas(gcf, [pwd '/../lecture/images/spike_detection.pdf'], 'pdf')

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plotting/code/pyramidal_response.mat Normal file
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21
plotting/lecture/plotting.tex
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@ -385,27 +385,10 @@ erstes Argument wieder ein Handle auf die Figure erwartet. Das zweite
Argument ist der Dateiname, und zuletzt muss das gew\"unschte Format
(Box \ref{graphicsformatbox}) angegeben werden.
\begin{lstlisting}[caption={Skript zur Erstellung des Plots in \figref{spikedetectionfig}.}, label=niceplotlisting]
figure()
set(gcf, 'PaperUnits', 'centimeters', 'PaperSize', [11.7 9.0]);
set(gcf, 'PaperPosition',[0.0 0.0 11.7 9.0], 'Color', 'white')
hold on
plot(time, neuronal_data, 'color', [ 0.2 0.5 0.7], 'linewidth', 1.)
plot(spike_times, ones(size(spike_times))*threshold, 'ro', 'markersize', 4)
line([time(1) time(end)], [threshold threshold], 'linestyle', '--',
'linewidth', 0.75, 'color', [0.9 0.9 0.9])
ylim([0 35])
xlim([0 2.25])
box('off')
xlabel('time [s]', 'fontname', 'MyriadPro-Regular', 'fontsize', 10)
ylabel('potential [mV]', 'fontname', 'MyriadPro-Regular', 'fontsize', 10)
title('pyramidal cell', 'fontname', 'MyriadPro-Regular', 'fontsize', 12)
set(gca, 'TickDir','out', 'linewidth', 1.5, 'fontname', 'MyriadPro-Regular')
saveas(gcf, 'spike_detection.pdf', 'pdf')
\end{lstlisting}
\lstinputlisting[caption={Skript zur Erstellung des Plots in \figref{spikedetectionfig}.}, label=niceplotlisting]{automatic_plot.m}
\begin{figure}
\includegraphics[width=0.5\columnwidth]{spike_detection}
\includegraphics{spike_detection}
\titlecaption{Automatisch erstellter Plot.}{Dieser Plot wurde vollst\"andig
mit dem Skript in Listing \ref{niceplotlisting} erstellt und
gespeichert.}\label{spikedetectionfig}

2
programming/lecture/scripts_functions-slides.tex
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@ -563,7 +563,7 @@ legend('show')
\begin{frame}[fragile]
\frametitle{Skripte und Funktionen}
\framesubtitle{Programmierstil}
In verschiednen Sprachen verschiedene Konventionen. In MATLAB ...
In verschiedenen Sprachen verschiedene Konventionen. In MATLAB ...
\begin{itemize}
\item Funktionen, Skripte: Kleinbuchstaben, Abk\"urzungen. (z.B. \verb+xcorr+, \verb+repmat+)
\item Konvertierungen immer mit format2format (z.B. \verb+num2str+)