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[projects] fixed data export for vector strength

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This commit is contained in:
Jan Grewe 2014-11-03 17:15:13 +01:00
parent a397443ae2
commit 0de095539b
1 changed files with 3 additions and 3 deletions
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6
projects/project_vector_strength/export_data.py
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@ -46,7 +46,7 @@ def get_zero_crossings(trace, threshold=0.0, rising_flank=True):
def has_cell_type(cell, cell_type): def has_cell_type(cell, cell_type):
if not os.path.exists(cell + '/info.dat'): if not os.path.exists(cell + '/info.dat'):
return false return False
else: else:
info = read_info_file(cell + '/info.dat') info = read_info_file(cell + '/info.dat')
return info[0]['Cell']['CellType'].lower() == cell_type.lower() return info[0]['Cell']['CellType'].lower() == cell_type.lower()
@ -76,7 +76,7 @@ def load_spike_data(cell, max_time):
if data[0][2][-1]/1000 < max_time: if data[0][2][-1]/1000 < max_time:
return None return None
else: else:
return data[0][2][data[0][2] <= max_time]/1000 return data[0][2][data[0][2] <= max_time*1000]
if __name__ == '__main__': if __name__ == '__main__':
@ -103,11 +103,11 @@ if __name__ == '__main__':
index += 1 index += 1
continue continue
spikes = load_spike_data(cell, 20) spikes = load_spike_data(cell, 20)
if spikes is None: if spikes is None:
print 'not enough baseline spikes' print 'not enough baseline spikes'
index += 1 index += 1
continue continue
eod_data = load_eod_data(cell, 20, 200000) eod_data = load_eod_data(cell, 20, 200000)
name = cell.split('/')[-1] + '_baseline.mat' name = cell.split('/')[-1] + '_baseline.mat'
sp.savemat(name, {'spike_times':spikes, 'eod':eod_data}) sp.savemat(name, {'spike_times':spikes, 'eod':eod_data})