import numpy as np import matplotlib.pyplot as plt from thunderfish.powerspectrum import spectrogram, decibel from modules.filehandling import LoadData from modules.datahandling import instantaneous_frequency from modules.filters import bandpass_filter from modules.plotstyle import PlotStyle ps = PlotStyle() def main(): # Load data datapath = "../data/2022-06-02-10_00/" data = LoadData(datapath) # good chirp times for data: 2022-06-02-10_00 window_start_seconds = 3 * 60 * 60 + 6 * 60 + 43.5 + 9 + 6.25 window_start_index = window_start_seconds * data.raw_rate window_duration_seconds = 0.2 window_duration_index = window_duration_seconds * data.raw_rate timescaler = 1000 raw = data.raw[window_start_index:window_start_index + window_duration_index, 10] fig, (ax1, ax2, ax3) = plt.subplots( 3, 1, figsize=(12 * ps.cm, 10*ps.cm), sharex=True, sharey=True) # plot instantaneous frequency filtered1 = bandpass_filter( signal=raw, lowf=750, highf=1200, samplerate=data.raw_rate) filtered2 = bandpass_filter( signal=raw, lowf=550, highf=700, samplerate=data.raw_rate) freqtime1, freq1 = instantaneous_frequency( filtered1, data.raw_rate, smoothing_window=3) freqtime2, freq2 = instantaneous_frequency( filtered2, data.raw_rate, smoothing_window=3) ax1.plot(freqtime1*timescaler, freq1, color=ps.gblue1, lw=2, label=f"fish 1, {np.median(freq1):.0f} Hz") ax1.plot(freqtime2*timescaler, freq2, color=ps.gblue3, lw=2, label=f"fish 2, {np.median(freq2):.0f} Hz") ax1.legend(bbox_to_anchor=(0, 1.02, 1, 0.2), loc="lower center", mode="normal", borderaxespad=0, ncol=2) ps.hide_xax(ax1) # plot fine spectrogram spec_power, spec_freqs, spec_times = spectrogram( raw, ratetime=data.raw_rate, freq_resolution=150, overlap_frac=0.2, ) ylims = [300, 1200] fmask = np.zeros(spec_freqs.shape, dtype=bool) fmask[(spec_freqs > ylims[0]) & (spec_freqs < ylims[1])] = True ax2.imshow( decibel(spec_power[fmask, :]), extent=[ spec_times[0]*timescaler, spec_times[-1]*timescaler, spec_freqs[fmask][0], spec_freqs[fmask][-1], ], aspect="auto", origin="lower", interpolation="gaussian", alpha=1, ) ps.hide_xax(ax2) # plot coarse spectrogram spec_power, spec_freqs, spec_times = spectrogram( raw, ratetime=data.raw_rate, freq_resolution=10, overlap_frac=0.3, ) fmask = np.zeros(spec_freqs.shape, dtype=bool) fmask[(spec_freqs > ylims[0]) & (spec_freqs < ylims[1])] = True ax3.imshow( decibel(spec_power[fmask, :]), extent=[ spec_times[0]*timescaler, spec_times[-1]*timescaler, spec_freqs[fmask][0], spec_freqs[fmask][-1], ], aspect="auto", origin="lower", interpolation="gaussian", alpha=1, ) # ps.hide_xax(ax3) ax3.set_xlabel("time [ms]") ax2.set_ylabel("frequency [Hz]") ax1.set_yticks(np.arange(400, 1201, 400)) ax1.spines.left.set_bounds((400, 1200)) ax2.set_yticks(np.arange(400, 1201, 400)) ax2.spines.left.set_bounds((400, 1200)) ax3.set_yticks(np.arange(400, 1201, 400)) ax3.spines.left.set_bounds((400, 1200)) plt.subplots_adjust(left=0.17, right=0.98, top=0.9, bottom=0.14, hspace=0.35) plt.savefig('../poster/figs/introplot.pdf') plt.show() if __name__ == '__main__': main()