raab/GP2023_chirp_detection
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adding plots

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This commit is contained in:
wendtalexander 2023-01-23 09:33:47 +01:00
parent 16e6003958
commit 039a027108
1 changed files with 1 additions and 2 deletions
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code/plot_event_timeline.py
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@ -104,7 +104,6 @@ def correct_chasing_events(
def main(datapath: str): def main(datapath: str):
# behabvior is pandas dataframe with all the data # behabvior is pandas dataframe with all the data
bh = Behavior(datapath) bh = Behavior(datapath)
embed()
# chirps are not sorted in time (presumably due to prior groupings) # chirps are not sorted in time (presumably due to prior groupings)
# get and sort chirps and corresponding fish_ids of the chirps # get and sort chirps and corresponding fish_ids of the chirps
chirps = bh.chirps[np.argsort(bh.chirps)] chirps = bh.chirps[np.argsort(bh.chirps)]
@ -125,7 +124,7 @@ def main(datapath: str):
fish1 = (chirps[chirps_fish_ids == all_fish_ids[0]] / 60) /60 fish1 = (chirps[chirps_fish_ids == all_fish_ids[0]] / 60) /60
fish2 = (chirps[chirps_fish_ids == all_fish_ids[1]] / 60) /60 fish2 = (chirps[chirps_fish_ids == all_fish_ids[1]] / 60) /60
fig, ax = plt.subplots(4, 1, figsize=(10, 5), height_ratios=[0.5, 0.5, 0.5, 6]) fig, ax = plt.subplots(4, 1, figsize=(10, 5), height_ratios=[0.5, 0.5, 0.5, 6], sharex=True)
# marker size # marker size
s = 200 s = 200
ax[0].scatter(physical_contact, np.ones(len(physical_contact)), color='red', marker='|', s=s) ax[0].scatter(physical_contact, np.ones(len(physical_contact)), color='red', marker='|', s=s)