160 lines
4.8 KiB
TeX
160 lines
4.8 KiB
TeX
% Created 2022-02-16 Wed 15:43
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% Intended LaTeX compiler: pdflatex
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\documentclass[presentation]{beamer}
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\usepackage[utf8]{inputenc}
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\usepackage[T1]{fontenc}
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\usepackage{graphicx}
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\usepackage{grffile}
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\usepackage{longtable}
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\usepackage{wrapfig}
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\usepackage{rotating}
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\usepackage[normalem]{ulem}
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\usepackage{amsmath}
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\usepackage{textcomp}
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\usepackage{amssymb}
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\usepackage{capt-of}
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\usepackage{hyperref}
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\usepackage[backend=bibtex,sorting=none, style=numeric-comp, citestyle=numeric-comp]{biblatex}
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\usepackage{endnotes}
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\bibliography{H2v01.bib} %% point at your bib file
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\usepackage{tikz,bm}
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\usepackage{epstopdf}
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\graphicspath{{../Figures/}}
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\definecolor{mcgillred}{RGB}{237, 27, 47}
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\definecolor{darkred}{RGB}{158,9,24}
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\definecolor{palegray}{RGB}{244,244,244}
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\definecolor{grayt}{RGB}{180,180,180}
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\definecolor{grayb}{RGB}{228,228,228}
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\definecolor{black}{RGB}{0,0,0}
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\setbeamercolor{palette primary}{bg=mcgillred,fg=white}
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\setbeamercolor{palette secondary}{bg=mcgillred,fg=white}
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\setbeamercolor{palette tertiary}{bg=mcgillred,fg=white}
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\setbeamercolor{palette tertiary}{bg=mcgillred,fg=white}
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\setbeamercolor{structure}{fg=mcgillred}
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\setbeamercolor{title}{fg=mcgillred}
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\setbeamercolor{frametitle}{fg=mcgillred}
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\setbeamercolor{block body}{bg=palegray,fg=black}
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\setbeamercolor{block title}{bg=mcgillred,fg=white}
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\setbeamerfont{title}{size=\Large, series=\bfseries}
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\setbeamercolor{alerted text}{fg=black}
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\setbeamerfont{alerted text}{series=\bfseries}
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\setbeamercolor{block title alerted}{bg=red,fg=black}
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\setbeamerfont{block title alerted}{series=\mdseries}
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\newcommand{\nox}{\(\mathrm{NO_{x}}\)}
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\newlength\figH
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\newlength\figW
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\setbeamertemplate{caption}{\raggedright\insertcaption\par}
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\setbeamerfont{caption}{size=\tiny}
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\setlength\abovecaptionskip{-5pt}
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\renewcommand{\footnote}{\endnote}
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\usepackage{animate}
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\usetheme{Boadilla}
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\author{Nils Koch}
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\date{}
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\title{Figure update}
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\subtitle{}
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\hypersetup{
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pdfauthor={Nils Koch},
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pdftitle={Figure update},
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pdfkeywords={},
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pdfsubject={},
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pdfcreator={Emacs 27.2 (Org mode 9.4.4)},
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pdflang={English}}
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\begin{document}
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\maketitle
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\section{Introduction}
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\label{sec:orgaa79910}
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\begin{frame}[label={sec:org5e30c84}]{Intro to org to Beamer}
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\begin{itemize}
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\item This is not that visually appealling, but I haven't taken the time to set the colors and style to my liking in the Latex header
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\item I have tried to include as many examples of things I find useful as possible
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\begin{itemize}
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\item sometimes this makes the slide not make much sense, but the example of how to do things is hopefully useful
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\end{itemize}
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\item The only slight pain with using org for both Beamer and normal Latex pdf is:
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\begin{itemize}
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\item you cannot have the pdf open in some pdf viewers and export to it (eg adobe)
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\item I use Sumatra (\url{https://www.sumatrapdfreader.org/free-pdf-reader})
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\begin{itemize}
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\item can have your pdf open in sumatra, export to it and it will update the pdf to the new exported file while open
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\end{itemize}
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\end{itemize}
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\end{itemize}
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\end{frame}
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\section{Figure update}
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\label{sec:orgf0c258a}
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\begin{frame}[label={sec:orgbc00e40}]{Firing Characterization}
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\vspace{-0.5cm}
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\begin{columns}
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\begin{column}[t]{0.65\columnwidth}
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\begin{itemize}
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\item Firing is a complicated phenomenon
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\item How to best characterize it?
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\begin{itemize}
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\item rheobase
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\item AUC
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\end{itemize}
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\end{itemize}
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\end{column}
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\begin{column}[t]{0.35\columnwidth}
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\begin{center}
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\includegraphics[width=0.95\textwidth]{firing_characterization.pdf}
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\end{center}
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\end{column}
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\end{columns}
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\end{frame}
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\begin{frame}[label={sec:org30ceea9}]{Diversity in Firing Properties of the Models}
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\begin{center}
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\includegraphics[width=0.55\textwidth]{diversity_in_firing.pdf}
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\end{center}
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\end{frame}
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\begin{frame}[label={sec:org2ecf870}]{Sensitivy analysis: OFAT}
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\vspace{-2cm}
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\begin{itemize}
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\item[{$\square$}] one factor at a time sensitivity analysis
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\item simulate firing responses
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\begin{itemize}
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\item compute fI curves
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\begin{itemize}
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\item get rheobase
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\item compute AUC
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\end{itemize}
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\end{itemize}
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\end{itemize}
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\end{frame}
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\begin{frame}[label={sec:orgd668fd1}]{Rheobase sensitivity Analysis}
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\begin{center}
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\includegraphics[width=0.85\textwidth]{rheobase_correlation.pdf}
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\end{center}
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\tiny Koch et al. 2022
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\end{frame}
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\begin{frame}[label={sec:orgb070147}]{AUC Sensitivity Analysis}
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\begin{itemize}
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\item AUC = area under the curve
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\end{itemize}
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\begin{center}
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\includegraphics[width=0.75\textwidth]{AUC_correlation.pdf}
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\end{center}
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\begin{itemize}
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\item AUC over the initial non-zero fI curve is a proxy for slope
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\end{itemize}
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\end{frame}
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\begin{frame}[label={sec:orgb9500d1}]{\(K_V1.1\) Mutations}
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\begin{center}
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\includegraphics[width=0.95\textwidth]{simulation_model_comparison.pdf}
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\end{center}
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\end{frame}
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\begin{frame}[label={sec:orga5c8265}]{Ramp Firing}
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\begin{center}
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\includegraphics[width=0.95\textwidth]{ramp_firing.pdf}
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\end{center}
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\end{frame}
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\end{document}
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