47 lines
1.7 KiB
Bash
47 lines
1.7 KiB
Bash
# Bash shell script to run all simulations and analysis
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# Individual Neuronal models
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python ./Neuron_models/RS_pyramidal_model.py
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python ./Neuron_models/RS_pyramidal_Kv_model.py
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python ./Neuron_models/RS_inhib_model.py
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python ./Neuron_models/RS_inhib_Kv_model.py
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python ./Neuron_models/FS_model.py
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python ./Neuron_models/FS_Kv_model.py
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python ./Neuron_models/STN_model.py
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python ./Neuron_models/STN_Kv_model.py
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python ./Neuron_models/STN_Delta_Kv_model.py
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python ./Neuron_models/Cb_stellate_model.py
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python ./Neuron_models/Cb_stellate_Kv_model.py
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python ./Neuron_models/Cb_stellate_Delta_Kv_model.py
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# Sensitivity Analysis
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python ./Sensitivity_Analysis/SA_RS_pyramidal.py
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python ./Sensitivity_Analysis/SA_RS_pyramidal_Kv.py
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python ./Sensitivity_Analysis/SA_RS_inhib.py
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python ./Sensitivity_Analysis/SA_RS_inhib_Kv.py
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python ./Sensitivity_Analysis/SA_FS.py
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python ./Sensitivity_Analysis/SA_FS_Kv.py
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python ./Sensitivity_Analysis/SA_STN.py
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python ./Sensitivity_Analysis/SA_STN_Kv.py
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python ./Sensitivity_Analysis/SA_STN_Delta_Kv.py
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python ./Sensitivity_Analysis/SA_Cb_stellate.py
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python ./Sensitivity_Analysis/SA_Cb_stellate_Kv.py
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python ./Sensitivity_Analysis/SA_Cb_stellate_Delta_Kv.py
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# KCNA1 mutations in models
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python ./KCNA1_mutatoins/mut_RS_pyramidal_Kv.py
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python ./KCNA1_mutatoins/mut_RS_inhib_Kv.py
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python ./KCNA1_mutatoins/mut_FS_Kv.py
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python ./KCNA1_mutatoins/mut_STN.py
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python ./KCNA1_mutatoins/mut_STN_Kv.py
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python ./KCNA1_mutatoins/mut_STN_Delta_Kv.py
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python ./KCNA1_mutatoins/mut_Cb_stellate.py
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python ./KCNA1_mutatoins/mut_Cb_stellate_Kv.py
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python ./KCNA1_mutatoins/mut_Cb_stellate_Delta_Kv.py
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# Data collection and csv generation
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python SA_collection.py
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python Plotting_data_collection.py |