small changes observed during word file preparation

Figures/AUC_correlation.py

@@ -427,5 +427,5 @@ ax2.text(-0.075, 1.35, string.ascii_uppercase[8], transform=ax2.transAxes, size=
 
 #save
 fig.set_size_inches(cm2inch(20.75,12))
-fig.savefig('./Figures/AUC_correlation.pdf', dpi=fig.dpi)
+fig.savefig('./Figures/AUC_correlation.png', dpi=fig.dpi) #pdf #eps
 plt.show()

Figures/diversity_in_firing.py

@@ -188,7 +188,7 @@ for i in range(0,len(models)):
 
 # save
 fig.set_size_inches(cm2inch(17.6,20))
-fig.savefig('./Figures/diversity_in_firing.pdf', dpi=fig.dpi)
+fig.savefig('./Figures/diversity_in_firing.png', dpi=fig.dpi) #pdf # eps
 plt.show()
 
 

Figures/firing_characterization.py

@@ -303,14 +303,15 @@ ncol = 2
 fig.legend(handles=[wt, mut], loc='center', bbox_to_anchor=pos, ncol=ncol, frameon=False, fontsize=8)
 
 fig.set_size_inches(cm2inch(8.5,12))
-fig.savefig('./Figures/firing_characterization.pdf', dpi=fig.dpi)
+fig.savefig('./Figures/firing_characterization.png', dpi=fig.dpi) #pdf #eps
 plt.show()
 
 
 
 #%% with arrows
 fig = plt.figure(figsize=cm2inch(7, 12))
-gs = gridspec.GridSpec(3,6, top=0.95, bottom=0.1, left=0.15, right = 0.95, hspace=0.8, wspace=0.6)
+# gs = gridspec.GridSpec(3,6, top=0.95, bottom=0.1, left=0.15, right = 0.95, hspace=0.8, wspace=0.6)
+gs = gridspec.GridSpec(3,6, top=0.9, bottom=0.05, left=0.15, right = 0.9, hspace=0.8, wspace=0.6)
 ax1 = fig.add_subplot(gs[0,1:])
 show_spines(ax1, 'lb')
 plot_AUC(ax1, width=0.2)
@@ -364,5 +365,5 @@ ax3_BR.annotate('', (0.7, 75), (0.8, 37.5), arrowprops=dict(arrowstyle="<|-", co
 
 
 fig.set_size_inches(cm2inch(8.5,12))
-fig.savefig('./Figures/firing_characterization_arrows.pdf', dpi=fig.dpi) #bbox_inches='tight', dpi=fig.dpi
+fig.savefig('./Figures/firing_characterization_arrows.png', dpi=fig.dpi, bbox_inches='tight') #, dpi=fig.dpi #pdf #eps
 plt.show()

Figures/ramp_firing.py

@@ -232,7 +232,8 @@ def add_scalebar(ax, matchx=True, matchy=True, hidex=True, hidey=True, **kwargs)
 
 def plot_ramp_V(ax, model='RS Pyramidal'):  # , stop=750
     model_ramp = pd.read_csv('./Figures/Data/model_ramp.csv')
-    ax.plot(model_ramp['t'], model_ramp[model], 'k', linewidth=0.0025)
+    # ax.plot(model_ramp['t'], model_ramp[model], 'k', linewidth=0.0025)
+    ax.plot(model_ramp['t'], model_ramp[model], 'k', linewidth=0.1)
     ax.set_ylabel('V')
     ax.set_xlabel('Time [s]')
     ax.set_ylim(-80, 60)
@@ -316,6 +317,6 @@ for i in range(0,len(models)):
 
 #save
 fig.set_size_inches(cm2inch(17.6,22))
-fig.savefig('./Figures/ramp_firing.pdf', dpi=fig.dpi)
+fig.savefig('./Figures/ramp_firing.png', dpi=fig.dpi)#pdf #eps
 plt.show()
 

Figures/rheobase_correlation.py

@@ -424,5 +424,5 @@ ax2.text(-0.075, 1.35, string.ascii_uppercase[8], transform=ax2.transAxes, size=
 
 # save
 fig.set_size_inches(cm2inch(20.75,12))
-fig.savefig('./Figures/rheobase_correlation.pdf', dpi=fig.dpi) #bbox_inches='tight', dpi=fig.dpi
+fig.savefig('./Figures/rheobase_correlation.png', dpi=fig.dpi) #bbox_inches='tight', dpi=fig.dpi # eps # pdf
 plt.show()

Figures/simulation_model_comparison.py

@@ -241,6 +241,6 @@ axr1.text(-0.77, 1.1, string.ascii_uppercase[j+1], transform=axr1.transAxes, siz
 
 # save
 fig.set_size_inches(cm2inch(22.2,15))
-fig.savefig('./Figures/simulation_model_comparison.pdf', dpi=fig.dpi)
+fig.savefig('./Figures/simulation_model_comparison.png', dpi=fig.dpi) #eps
 plt.show()