Start preparing manuscript.tex towards submission format and working on code

Code/Neuron_models/Cb_stellate_Delta_Kv_model.py

@@ -8,7 +8,7 @@ Created on Fri Jun 18 10:47:40 2021
 
 import numpy as np
 import os
-from Utility import capacitance, stimulus_init, init_dict
+from Code.Functions.Utility_fxns import capacitance, stimulus_init, init_dict
 from Code.Functions.Cb_stellate_fxns_Kv import Cb_stellate_Kv_mut
 
 # model parameters

Code/Neuron_models/Cb_stellate_Kv_model.py

@@ -7,7 +7,7 @@ Created on Sat May  8 16:20:11 2021
 
 import numpy as np
 import os
-from Utility import capacitance, stimulus_init, init_dict
+from Code.Functions.Utility_fxns import capacitance, stimulus_init, init_dict
 from Code.Functions.Cb_stellate_fxns_Kv import Cb_stellate_Kv_mut
 
 # model parameters

Code/Neuron_models/Cb_stellate_model.py

@@ -1,6 +1,6 @@
 import numpy as np
 import os
-from Code.Functions.Utility import capacitance, stimulus_init, init_dict
+from Code.Functions.Utility_fxns import capacitance, stimulus_init, init_dict
 from Code.Functions.Cb_stellate_fxns import Cb_stellate_mut
 
 # model parameters

Code/Neuron_models/FS_Kv_model.py

@@ -9,7 +9,7 @@ import numpy as np
 from numba import types
 from numba.typed import Dict
 import os
-from Code.Functions.Utility import capacitance, stimulus_init, init_dict
+from Code.Functions.Utility_fxns import capacitance, stimulus_init, init_dict
 from Code.Functions.Pospischil_fxns import Pospischil_mut
 
 # model parameters

Code/Neuron_models/FS_model.py

@@ -7,12 +7,11 @@ Created on Fri May  7 23:37:22 2021
 Original Pospischil FS (no Kv1.1)
 """
 
-# Todo: error when run
 import numpy as np
 from numba import types
 from numba.typed import Dict
 import os
-from Code.Functions.Utility import capacitance, stimulus_init, init_dict
+from Code.Functions.Utility_fxns import capacitance, stimulus_init, init_dict
 from Code.Functions.Pospischil_fxns import Pospischil_mut
 
 

Code/Neuron_models/RS_inhib_Kv_model.py

@@ -9,7 +9,7 @@ import numpy as np
 from numba import types
 from numba.typed import Dict
 import os
-from Code.Functions.Utility import capacitance, stimulus_init,  init_dict
+from Code.Functions.Utility_fxns import capacitance, stimulus_init,  init_dict
 from Code.Functions.Pospischil_fxns import Pospischil_mut
 
 # model parameters

Code/Neuron_models/RS_inhib_model.py

@@ -11,7 +11,7 @@ import numpy as np
 from numba import types
 from numba.typed import Dict
 import os
-from Code.Functions.Utility import capacitance, stimulus_init, init_dict
+from Code.Functions.Utility_fxns import capacitance, stimulus_init, init_dict
 from Code.Functions.Pospischil_fxns import Pospischil_mut
 
 

Code/Neuron_models/RS_pyramidal_Kv_model.py

@@ -10,7 +10,7 @@ import numpy as np
 from numba import types
 from numba.typed import Dict
 import os
-from Code.Functions.Utility import capacitance, stimulus_init, init_dict
+from Code.Functions.Utility_fxns import capacitance, stimulus_init, init_dict
 from Code.Functions.Pospischil_fxns import Pospischil_mut
 
 # model parameters

Code/Neuron_models/RS_pyramidal_model.py

@@ -9,7 +9,7 @@ import numpy as np
 from numba import types
 from numba.typed import Dict
 import os
-from Code.Functions.Utility import capacitance, stimulus_init, init_dict
+from Code.Functions.Utility_fxns import capacitance, stimulus_init, init_dict
 from Code.Functions.Pospischil_fxns import Pospischil_mut
 
 # model parameters

Code/Neuron_models/STN_Delta_Kv_model.py

@@ -6,7 +6,7 @@ Created on Fri Jun 18 10:53:45 2021
 """
 import numpy as np
 import os
-from Code.Functions.Utility import capacitance, stimulus_init, init_dict
+from Code.Functions.Utility_fxns import capacitance, stimulus_init, init_dict
 from Code.Functions.STN_fxns_Kv import STN_Kv_mut
 
 

Code/Neuron_models/STN_Kv_model.py

@@ -1,6 +1,6 @@
 import numpy as np
 import os
-from Code.Functions.Utility import capacitance, stimulus_init, init_dict
+from Code.Functions.Utility_fxns import capacitance, stimulus_init, init_dict
 from Code.Functions.STN_fxns_Kv import STN_Kv_mut
 
 

Code/Neuron_models/STN_model.py

@@ -1,6 +1,6 @@
 import numpy as np
 import os
-from Code.Functions.Utility import capacitance, stimulus_init, init_dict
+from Code.Functions.Utility_fxns import capacitance, stimulus_init, init_dict
 from Code.Functions.STN_fxns import STN_mut