nkoch/model_mutations_2022
2
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity

Worked on Uli's comments after meeting with Lukas

Browse Source
This commit is contained in:
nkoch1
2022-09-05 15:34:56 -04:00
parent c79560d191
commit 387c1c907d
3 changed files with 37 additions and 29 deletions
Download Patch File Download Diff File Expand all files Collapse all files

BIN
Figures/simulation_model_comparison.pdf
View File

Binary file not shown.

8
Figures/simulation_model_comparison.py
View File

@@ -160,7 +160,7 @@ def mutation_plot(ax, model='RS_pramidal'):
ax.plot(rheo.loc['V404I', model_names[mod]]*1000, AUC.loc['V404I', model_names[mod]]*100, linestyle='',
markeredgecolor=mut_col[3], markerfacecolor=mut_col[5], marker=Marker_dict[model_display_names[mod]],markersize=4)
ax.set_title(model_display_names[mod], pad=14)
ax.set_xlabel('$\Delta$ Rheobase [pA]')
ax.set_xlabel('$\Delta$Rheobase [pA]')
ax.set_ylabel('Normalized $\Delta$AUC (%)')
ax.spines['right'].set_visible(False)
ax.spines['top'].set_visible(False)
@@ -227,7 +227,7 @@ mutation_legend(ax21, marker_s_leg, pos, ncol)
# plot correlation matrices
correlation_plot(axr1,df = 'AUC', title='Normalized $\Delta$AUC', cbar=False)
correlation_plot(axr0,df = 'rheo', title='$\Delta$ Rheobase', cbar=True)
correlation_plot(axr0,df = 'rheo', title='$\Delta$Rheobase', cbar=True)
# add subplot labels
axs = [ax00, ax01,ax02, ax10, ax11, ax12, ax20, ax21, ax22]
@@ -241,7 +241,7 @@ axr1.text(-0.77, 1.1, string.ascii_uppercase[j+1], transform=axr1.transAxes, siz
# save
fig.set_size_inches(cm2inch(22.2,15))
# fig.savefig('./Figures/simulation_model_comparison.pdf', dpi=fig.dpi) #eps
fig.savefig('./Figures/simulation_model_comparison.png', dpi=fig.dpi) #eps
fig.savefig('./Figures/simulation_model_comparison.pdf', dpi=fig.dpi) #eps
# fig.savefig('./Figures/simulation_model_comparison.png', dpi=fig.dpi) #eps
plt.show()