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a16fe0b735
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| 45a267c8c7 |
402
poetry.lock
generated
402
poetry.lock
generated
@ -1,4 +1,22 @@
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|
||||
{file = "ptyprocess-0.7.0.tar.gz", hash = "sha256:5c5d0a3b48ceee0b48485e0c26037c0acd7d29765ca3fbb5cb3831d347423220"},
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "pure-eval"
|
||||
version = "0.2.3"
|
||||
description = "Safely evaluate AST nodes without side effects"
|
||||
optional = false
|
||||
python-versions = "*"
|
||||
files = [
|
||||
{file = "pure_eval-0.2.3-py3-none-any.whl", hash = "sha256:1db8e35b67b3d218d818ae653e27f06c3aa420901fa7b081ca98cbedc874e0d0"},
|
||||
{file = "pure_eval-0.2.3.tar.gz", hash = "sha256:5f4e983f40564c576c7c8635ae88db5956bb2229d7e9237d03b3c0b0190eaf42"},
|
||||
]
|
||||
|
||||
[package.extras]
|
||||
tests = ["pytest"]
|
||||
|
||||
[[package]]
|
||||
name = "pygments"
|
||||
version = "2.18.0"
|
||||
@ -672,6 +889,20 @@ files = [
|
||||
{file = "PyQt6_sip-13.8.0.tar.gz", hash = "sha256:2f74cf3d6d9cab5152bd9f49d570b2dfb87553ebb5c4919abfde27f5b9fd69d4"},
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "pyqtgraph"
|
||||
version = "0.13.7"
|
||||
description = "Scientific Graphics and GUI Library for Python"
|
||||
optional = false
|
||||
python-versions = ">=3.9"
|
||||
files = [
|
||||
{file = "pyqtgraph-0.13.7-py3-none-any.whl", hash = "sha256:7754edbefb6c367fa0dfb176e2d0610da3ada20aa7a5318516c74af5fb72bf7a"},
|
||||
{file = "pyqtgraph-0.13.7.tar.gz", hash = "sha256:64f84f1935c6996d0e09b1ee66fe478a7771e3ca6f3aaa05f00f6e068321d9e3"},
|
||||
]
|
||||
|
||||
[package.dependencies]
|
||||
numpy = ">=1.22.0"
|
||||
|
||||
[[package]]
|
||||
name = "python-dateutil"
|
||||
version = "2.9.0.post0"
|
||||
@ -777,16 +1008,50 @@ files = [
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "tomli"
|
||||
version = "2.0.1"
|
||||
description = "A lil' TOML parser"
|
||||
name = "stack-data"
|
||||
version = "0.6.3"
|
||||
description = "Extract data from python stack frames and tracebacks for informative displays"
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
python-versions = "*"
|
||||
files = [
|
||||
{file = "stack_data-0.6.3-py3-none-any.whl", hash = "sha256:d5558e0c25a4cb0853cddad3d77da9891a08cb85dd9f9f91b9f8cd66e511e695"},
|
||||
{file = "stack_data-0.6.3.tar.gz", hash = "sha256:836a778de4fec4dcd1dcd89ed8abff8a221f58308462e1c4aa2a3cf30148f0b9"},
|
||||
]
|
||||
|
||||
[package.dependencies]
|
||||
asttokens = ">=2.1.0"
|
||||
executing = ">=1.2.0"
|
||||
pure-eval = "*"
|
||||
|
||||
[package.extras]
|
||||
tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"]
|
||||
|
||||
[[package]]
|
||||
name = "tomlkit"
|
||||
version = "0.13.2"
|
||||
description = "Style preserving TOML library"
|
||||
optional = false
|
||||
python-versions = ">=3.8"
|
||||
files = [
|
||||
{file = "tomli-2.0.1-py3-none-any.whl", hash = "sha256:939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc"},
|
||||
{file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"},
|
||||
{file = "tomlkit-0.13.2-py3-none-any.whl", hash = "sha256:7a974427f6e119197f670fbbbeae7bef749a6c14e793db934baefc1b5f03efde"},
|
||||
{file = "tomlkit-0.13.2.tar.gz", hash = "sha256:fff5fe59a87295b278abd31bec92c15d9bc4a06885ab12bcea52c71119392e79"},
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "traitlets"
|
||||
version = "5.14.3"
|
||||
description = "Traitlets Python configuration system"
|
||||
optional = false
|
||||
python-versions = ">=3.8"
|
||||
files = [
|
||||
{file = "traitlets-5.14.3-py3-none-any.whl", hash = "sha256:b74e89e397b1ed28cc831db7aea759ba6640cb3de13090ca145426688ff1ac4f"},
|
||||
{file = "traitlets-5.14.3.tar.gz", hash = "sha256:9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7"},
|
||||
]
|
||||
|
||||
[package.extras]
|
||||
docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
|
||||
test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<8.2)", "pytest-mock", "pytest-mypy-testing"]
|
||||
|
||||
[[package]]
|
||||
name = "typer"
|
||||
version = "0.12.5"
|
||||
@ -826,7 +1091,18 @@ files = [
|
||||
{file = "uldaq-1.2.3.tar.gz", hash = "sha256:2d405ead334bb4e37c20b72d8ec498f0e372b08f1d3323f622abe0581ac28b98"},
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "wcwidth"
|
||||
version = "0.2.13"
|
||||
description = "Measures the displayed width of unicode strings in a terminal"
|
||||
optional = false
|
||||
python-versions = "*"
|
||||
files = [
|
||||
{file = "wcwidth-0.2.13-py2.py3-none-any.whl", hash = "sha256:3da69048e4540d84af32131829ff948f1e022c1c6bdb8d6102117aac784f6859"},
|
||||
{file = "wcwidth-0.2.13.tar.gz", hash = "sha256:72ea0c06399eb286d978fdedb6923a9eb47e1c486ce63e9b4e64fc18303972b5"},
|
||||
]
|
||||
|
||||
[metadata]
|
||||
lock-version = "2.0"
|
||||
python-versions = "^3.12"
|
||||
content-hash = "477748fbc18bde095d13dea548108541c1b584242099398155787361b1dc31fe"
|
||||
content-hash = "b1076b7f750e8f7e66542918ec746e74544fbfdb376875158f083fb573d18107"
|
||||
|
||||
@ -1,3 +1,7 @@
|
||||
[project]
|
||||
organization = "de.uni-tuebingen.neuroetho"
|
||||
copyright = "(c) 2020, Neuroethology lab, Uni Tuebingen"
|
||||
|
||||
[tool.poetry]
|
||||
name = "pyrelacs"
|
||||
version = "0.1.0"
|
||||
@ -6,14 +10,11 @@ authors = ["wendtalexander <wendtalexander@protonmail.com>"]
|
||||
repository = "https://whale.am28.uni-tuebingen.de/git/awendt/pyrelacs"
|
||||
readme = "README.md"
|
||||
license = "MIT"
|
||||
organization = "de.uni-tuebingen.neuroetho"
|
||||
classifiers = [
|
||||
"Topic :: Scientific/Engineering",
|
||||
"Intended Audience :: Science/Research",
|
||||
"Intended Audience :: End Users/Desktop",
|
||||
]
|
||||
copyright = "(c) 2020, Neuroethology lab, Uni Tuebingen"
|
||||
|
||||
include = [
|
||||
{ path = "pyproject.toml" }
|
||||
]
|
||||
@ -23,15 +24,19 @@ python = "^3.12"
|
||||
uldaq = "^1.2.3"
|
||||
typer = "^0.12.5"
|
||||
matplotlib = "^3.9.2"
|
||||
numpy = "^2.1.1"
|
||||
numpy = "^1.9"
|
||||
pyqt6 = "^6.7.1"
|
||||
tomli = "^2.0.1"
|
||||
tomlkit = "^0.13.2"
|
||||
scipy = "^1.14.1"
|
||||
nixio = "^1.5.3"
|
||||
pyqtgraph = "^0.13.7"
|
||||
|
||||
[tool.poetry.scripts]
|
||||
pyrelacs = "pyrelacs.app:main"
|
||||
|
||||
[tool.poetry.group.dev.dependencies]
|
||||
ipython = "^8.27.0"
|
||||
|
||||
[build-system]
|
||||
requires = ["poetry-core"]
|
||||
requires = ["poetry-core>=1.0.0"]
|
||||
build-backend = "poetry.core.masonry.api"
|
||||
|
||||
@ -1,8 +1,8 @@
|
||||
import pathlib
|
||||
from PyQt6.QtGui import QAction
|
||||
import sys
|
||||
import pathlib
|
||||
|
||||
from PyQt6.QtCore import QProcess, QSize, QThreadPool, Qt, QSettings
|
||||
from PyQt6.QtCore import QSize, QThreadPool, QSettings
|
||||
from PyQt6.QtWidgets import (
|
||||
QApplication,
|
||||
QGridLayout,
|
||||
@ -12,9 +12,12 @@ from PyQt6.QtWidgets import (
|
||||
QMainWindow,
|
||||
QPlainTextEdit,
|
||||
)
|
||||
import pyqtgraph as pg
|
||||
import uldaq
|
||||
from IPython import embed
|
||||
from scipy.signal import welch, find_peaks
|
||||
import numpy as np
|
||||
import nixio as nix
|
||||
|
||||
from pyrelacs.util.logging import config_logging
|
||||
import pyrelacs.info as info
|
||||
@ -29,6 +32,7 @@ class PyRelacs(QMainWindow):
|
||||
super().__init__()
|
||||
self.setWindowTitle("PyRelacs")
|
||||
self.setMinimumSize(1000, 1000)
|
||||
self.plot_graph = pg.PlotWidget()
|
||||
|
||||
self.threadpool = QThreadPool()
|
||||
self.repros = Repro()
|
||||
@ -41,13 +45,18 @@ class PyRelacs(QMainWindow):
|
||||
self.daq_disconnect_button.setCheckable(True)
|
||||
self.daq_disconnect_button.clicked.connect(self.disconnect_dac)
|
||||
|
||||
self.plot_calibration_button = QPushButton("Plot Calibration")
|
||||
self.plot_calibration_button.setCheckable(True)
|
||||
self.plot_calibration_button.clicked.connect(self.plot_calibration)
|
||||
|
||||
self.text = QPlainTextEdit()
|
||||
self.text.setReadOnly(True)
|
||||
|
||||
layout = QGridLayout()
|
||||
layout.addWidget(self.daq_connect_button, 0, 0)
|
||||
layout.addWidget(self.plot_calibration_button, 0, 0)
|
||||
layout.addWidget(self.daq_disconnect_button, 0, 1)
|
||||
layout.addWidget(self.text, 2, 0, 1, 2)
|
||||
layout.addWidget(self.text, 3, 0, 1, 2)
|
||||
layout.addWidget(self.plot_graph, 2, 0, 1, 2)
|
||||
|
||||
self.toolbar = QToolBar("Repros")
|
||||
self.addToolBar(self.toolbar)
|
||||
@ -58,6 +67,67 @@ class PyRelacs(QMainWindow):
|
||||
widget.setLayout(layout)
|
||||
self.setCentralWidget(widget)
|
||||
|
||||
self.nix_file = nix.File.open(
|
||||
str(pathlib.Path(__file__).parent / "data"), nix.FileMode.ReadOnly
|
||||
)
|
||||
|
||||
def plot_calibration(self):
|
||||
def decibel(power, ref_power=1.0, min_power=1e-20):
|
||||
"""Transform power to decibel relative to ref_power.
|
||||
|
||||
\\[ decibel = 10 \\cdot \\log_{10}(power/ref\\_power) \\]
|
||||
Power values smaller than `min_power` are set to `-np.inf`.
|
||||
|
||||
Parameters
|
||||
----------
|
||||
power: float or array
|
||||
Power values, for example from a power spectrum or spectrogram.
|
||||
ref_power: float or None or 'peak'
|
||||
Reference power for computing decibel.
|
||||
If set to `None` or 'peak', the maximum power is used.
|
||||
min_power: float
|
||||
Power values smaller than `min_power` are set to `-np.inf`.
|
||||
|
||||
Returns
|
||||
-------
|
||||
decibel_psd: array
|
||||
Power values in decibel relative to `ref_power`.
|
||||
"""
|
||||
if np.isscalar(power):
|
||||
tmp_power = np.array([power])
|
||||
decibel_psd = np.array([power])
|
||||
else:
|
||||
tmp_power = power
|
||||
decibel_psd = power.copy()
|
||||
if ref_power is None or ref_power == "peak":
|
||||
ref_power = np.max(decibel_psd)
|
||||
decibel_psd[tmp_power <= min_power] = float("-inf")
|
||||
decibel_psd[tmp_power > min_power] = 10.0 * np.log10(
|
||||
decibel_psd[tmp_power > min_power] / ref_power
|
||||
)
|
||||
if np.isscalar(power):
|
||||
return decibel_psd[0]
|
||||
else:
|
||||
return decibel_psd
|
||||
|
||||
block = self.nix_file.blocks[0]
|
||||
for stim, fish in zip(
|
||||
list(block.data_arrays)[::2], list(block.data_arrays)[1::2]
|
||||
):
|
||||
beat = stim[:] + fish[:]
|
||||
beat_squared = beat**2
|
||||
|
||||
f, powerspec = welch(beat, fs=40_000.0)
|
||||
powerspec = decibel(powerspec)
|
||||
|
||||
f_sq, powerspec_sq = welch(beat_squared, fs=40_000.0)
|
||||
powerspec_sq = decibel(powerspec_sq)
|
||||
peaks = find_peaks(powerspec_sq, prominence=20)[0]
|
||||
pen = pg.mkPen()
|
||||
self.plot_graph.plot(
|
||||
np.arange(0, len(beat)) / 40_000.0, beat_squared, pen=pen
|
||||
)
|
||||
|
||||
def connect_dac(self):
|
||||
devices = uldaq.get_daq_device_inventory(uldaq.InterfaceType.USB)
|
||||
try:
|
||||
@ -93,6 +163,21 @@ class PyRelacs(QMainWindow):
|
||||
|
||||
def run_repro(self, n, fn):
|
||||
self.text.appendPlainText(f"started Repro {n}, {fn}")
|
||||
worker = Worker(self.repros.run_repro, self.nix_file, n, fn)
|
||||
worker.signals.result.connect(self.print_output)
|
||||
worker.signals.finished.connect(self.thread_complete)
|
||||
worker.signals.progress.connect(self.progress_fn)
|
||||
|
||||
self.threadpool.start(worker)
|
||||
|
||||
def print_output(self, s):
|
||||
print(s)
|
||||
|
||||
def thread_complete(self):
|
||||
print("THREAD COMPLETE!")
|
||||
|
||||
def progress_fn(self, n):
|
||||
print("%d%% done" % n)
|
||||
|
||||
|
||||
def main():
|
||||
@ -114,7 +199,7 @@ def main():
|
||||
window.resize(width, height)
|
||||
window.move(x, y)
|
||||
window.show()
|
||||
app.exec()
|
||||
exit_code = app.exec()
|
||||
|
||||
# store window position and size
|
||||
pos = window.pos()
|
||||
|
||||
BIN
pyrelacs/data
Normal file
BIN
pyrelacs/data
Normal file
Binary file not shown.
@ -1,9 +1,10 @@
|
||||
import tomlkit
|
||||
import pathlib
|
||||
|
||||
|
||||
def load_project_settings(project_root):
|
||||
# Read the pyproject.toml file
|
||||
with open(pathlib.Path.joinpath(project_root, 'pyproject.toml'), 'r') as f:
|
||||
with open(pathlib.Path.joinpath(project_root, "pyproject.toml"), "r") as f:
|
||||
pyproject_content = f.read()
|
||||
|
||||
# Parse the toml content
|
||||
@ -11,16 +12,16 @@ def load_project_settings(project_root):
|
||||
|
||||
# Access project settings
|
||||
return {
|
||||
'name': pyproject['tool']['poetry']['name'],
|
||||
'version': pyproject['tool']['poetry']['version'],
|
||||
'description': pyproject['tool']['poetry']['description'],
|
||||
'authors': pyproject['tool']['poetry']['authors'],
|
||||
'readme': pyproject['tool']['poetry']['authors'],
|
||||
'licence': pyproject['tool']['poetry']['license'],
|
||||
'organization': pyproject['tool']['poetry']['organization'],
|
||||
'classifiers': pyproject['tool']['poetry']['classifiers'],
|
||||
'copyright': pyproject['tool']['poetry']['copyright'],
|
||||
"repository": pyproject['tool']['poetry']['repository'],
|
||||
"name": pyproject["tool"]["poetry"]["name"],
|
||||
"version": pyproject["tool"]["poetry"]["version"],
|
||||
"description": pyproject["tool"]["poetry"]["description"],
|
||||
"authors": pyproject["tool"]["poetry"]["authors"],
|
||||
"readme": pyproject["tool"]["poetry"]["authors"],
|
||||
"licence": pyproject["tool"]["poetry"]["license"],
|
||||
"organization": pyproject["project"]["organization"],
|
||||
"classifiers": pyproject["tool"]["poetry"]["classifiers"],
|
||||
"copyright": pyproject["project"]["copyright"],
|
||||
"repository": pyproject["tool"]["poetry"]["repository"],
|
||||
}
|
||||
|
||||
|
||||
|
||||
@ -3,6 +3,7 @@ import sys
|
||||
import faulthandler
|
||||
import time
|
||||
|
||||
import nixio as nix
|
||||
import uldaq
|
||||
from IPython import embed
|
||||
import numpy as np
|
||||
@ -25,12 +26,10 @@ class Calibration(MccDac):
|
||||
self.AMPLITUDE = 1
|
||||
self.SINFREQ = 750
|
||||
|
||||
def run(self):
|
||||
|
||||
def segfault_handler(self, signum, frame):
|
||||
print(f"Segmentation fault caught! Signal number: {signum}")
|
||||
self.disconnect_dac()
|
||||
sys.exit(1) # Gracefully exit the program
|
||||
@staticmethod
|
||||
def run(nix_file: nix.File):
|
||||
calb = Calibration()
|
||||
calb.check_beat(nix_file)
|
||||
|
||||
def check_amplitude(self):
|
||||
db_values = [0.0, -5.0, -10.0, -20.0, -50.0]
|
||||
@ -53,7 +52,10 @@ class Calibration(MccDac):
|
||||
)
|
||||
|
||||
data_channel_one = self.read_analog(
|
||||
[0, 0], self.DURATION, self.SAMPLERATE, ScanOption=uldaq.ScanOption.EXTTRIGGER
|
||||
[0, 0],
|
||||
self.DURATION,
|
||||
self.SAMPLERATE,
|
||||
ScanOption=uldaq.ScanOption.EXTTRIGGER,
|
||||
)
|
||||
time.sleep(1)
|
||||
|
||||
@ -83,7 +85,7 @@ class Calibration(MccDac):
|
||||
|
||||
self.disconnect_dac()
|
||||
|
||||
def check_beat(self):
|
||||
def check_beat(self, nix_file: nix.File):
|
||||
self.set_attenuation_level(db_channel1=-10.0, db_channel2=0.0)
|
||||
t = np.arange(0, self.DURATION, 1 / self.SAMPLERATE)
|
||||
data = self.AMPLITUDE * np.sin(2 * np.pi * self.SINFREQ * t)
|
||||
@ -91,7 +93,8 @@ class Calibration(MccDac):
|
||||
db_values = [0.0, -5.0, -8.5, -10.0]
|
||||
colors = ["red", "blue", "black", "green"]
|
||||
colors_in = ["lightcoral", "lightblue", "grey", "lightgreen"]
|
||||
fig, axes = plt.subplots(2, 2, sharex="col")
|
||||
block = nix_file.create_block("Calibration", "data")
|
||||
# fig, axes = plt.subplots(2, 2, sharex="col")
|
||||
for i, db_value in enumerate(db_values):
|
||||
self.set_attenuation_level(db_channel1=db_value)
|
||||
stim = self.write_analog(
|
||||
@ -107,7 +110,6 @@ class Calibration(MccDac):
|
||||
ScanOption=uldaq.ScanOption.EXTTRIGGER,
|
||||
)
|
||||
self.diggital_trigger()
|
||||
signal.signal(signal.SIGSEGV, self.segfault_handler)
|
||||
log.info(self.ao_device)
|
||||
ai_status = uldaq.ScanStatus.RUNNING
|
||||
ao_status = uldaq.ScanStatus.RUNNING
|
||||
@ -127,8 +129,27 @@ class Calibration(MccDac):
|
||||
log.debug(
|
||||
f"Status Analog_output {ao_status}\n, Status Analog_input {ai_status}"
|
||||
)
|
||||
|
||||
channel1 = np.array(readout[::2])
|
||||
channel2 = np.array(readout[1::2])
|
||||
|
||||
block.create_data_array(
|
||||
f"stimulus_{db_value}",
|
||||
"Array",
|
||||
shape=data.shape,
|
||||
data=channel1,
|
||||
label="Voltage",
|
||||
unit="V",
|
||||
)
|
||||
block.create_data_array(
|
||||
f"fish_{db_value}",
|
||||
"Array",
|
||||
shape=data.shape,
|
||||
data=channel2,
|
||||
label="Voltage",
|
||||
unit="V",
|
||||
)
|
||||
|
||||
beat = channel1 + channel2
|
||||
beat_square = beat**2
|
||||
|
||||
@ -145,69 +166,69 @@ class Calibration(MccDac):
|
||||
f_in, powerspec_in = welch(channel2, fs=self.SAMPLERATE)
|
||||
powerspec_in = decibel(powerspec_in)
|
||||
|
||||
axes[0, 0].plot(
|
||||
t,
|
||||
channel1,
|
||||
label=f"{db_value} Readout Channel0",
|
||||
color=colors[i],
|
||||
)
|
||||
axes[0, 0].plot(
|
||||
t,
|
||||
channel2,
|
||||
label=f"{db_value} Readout Channel1",
|
||||
color=colors_in[i],
|
||||
)
|
||||
|
||||
axes[0, 1].plot(
|
||||
f_stim,
|
||||
powerspec_stim,
|
||||
label=f"{db_value} powerspec Channel0",
|
||||
color=colors[i],
|
||||
)
|
||||
axes[0, 1].plot(
|
||||
f_in,
|
||||
powerspec_in,
|
||||
label=f"{db_value} powerspec Channel2",
|
||||
color=colors_in[i],
|
||||
)
|
||||
axes[0, 1].set_xlabel("Freq [HZ]")
|
||||
axes[0, 1].set_ylabel("dB")
|
||||
|
||||
axes[1, 0].plot(
|
||||
t,
|
||||
beat,
|
||||
label="Beat",
|
||||
color=colors[i],
|
||||
)
|
||||
axes[1, 0].plot(
|
||||
t,
|
||||
beat**2,
|
||||
label="Beat squared",
|
||||
color=colors_in[i],
|
||||
)
|
||||
axes[1, 0].legend()
|
||||
|
||||
axes[1, 1].plot(
|
||||
f,
|
||||
powerspec,
|
||||
color=colors[i],
|
||||
)
|
||||
axes[1, 1].plot(
|
||||
f_sq,
|
||||
powerspec_sq,
|
||||
color=colors_in[i],
|
||||
label=f"dB {db_value}, first peak {np.min(f_sq[peaks])}",
|
||||
)
|
||||
axes[1, 1].scatter(
|
||||
f_sq[peaks],
|
||||
powerspec_sq[peaks],
|
||||
color="maroon",
|
||||
)
|
||||
axes[1, 1].set_xlabel("Freq [HZ]")
|
||||
axes[1, 1].set_ylabel("dB")
|
||||
axes[0, 0].legend()
|
||||
axes[1, 1].legend()
|
||||
plt.show()
|
||||
# axes[0, 0].plot(
|
||||
# t,
|
||||
# channel1,
|
||||
# label=f"{db_value} Readout Channel0",
|
||||
# color=colors[i],
|
||||
# )
|
||||
# axes[0, 0].plot(
|
||||
# t,
|
||||
# channel2,
|
||||
# label=f"{db_value} Readout Channel1",
|
||||
# color=colors_in[i],
|
||||
# )
|
||||
#
|
||||
# axes[0, 1].plot(
|
||||
# f_stim,
|
||||
# powerspec_stim,
|
||||
# label=f"{db_value} powerspec Channel0",
|
||||
# color=colors[i],
|
||||
# )
|
||||
# axes[0, 1].plot(
|
||||
# f_in,
|
||||
# powerspec_in,
|
||||
# label=f"{db_value} powerspec Channel2",
|
||||
# color=colors_in[i],
|
||||
# )
|
||||
# axes[0, 1].set_xlabel("Freq [HZ]")
|
||||
# axes[0, 1].set_ylabel("dB")
|
||||
#
|
||||
# axes[1, 0].plot(
|
||||
# t,
|
||||
# beat,
|
||||
# label="Beat",
|
||||
# color=colors[i],
|
||||
# )
|
||||
# axes[1, 0].plot(
|
||||
# t,
|
||||
# beat**2,
|
||||
# label="Beat squared",
|
||||
# color=colors_in[i],
|
||||
# )
|
||||
# axes[1, 0].legend()
|
||||
#
|
||||
# axes[1, 1].plot(
|
||||
# f,
|
||||
# powerspec,
|
||||
# color=colors[i],
|
||||
# )
|
||||
# axes[1, 1].plot(
|
||||
# f_sq,
|
||||
# powerspec_sq,
|
||||
# color=colors_in[i],
|
||||
# label=f"dB {db_value}, first peak {np.min(f_sq[peaks])}",
|
||||
# )
|
||||
# axes[1, 1].scatter(
|
||||
# f_sq[peaks],
|
||||
# powerspec_sq[peaks],
|
||||
# color="maroon",
|
||||
# )
|
||||
# axes[1, 1].set_xlabel("Freq [HZ]")
|
||||
# axes[1, 1].set_ylabel("dB")
|
||||
# axes[0, 0].legend()
|
||||
# axes[1, 1].legend()
|
||||
# plt.show()
|
||||
self.set_analog_to_zero()
|
||||
self.disconnect_dac()
|
||||
|
||||
|
||||
@ -1,15 +1,37 @@
|
||||
import sys
|
||||
import importlib.util
|
||||
import ast
|
||||
import pathlib
|
||||
|
||||
from IPython import embed
|
||||
import nixio as nix
|
||||
from pyrelacs.util.logging import config_logging
|
||||
|
||||
log = config_logging()
|
||||
|
||||
|
||||
class Repro:
|
||||
def __init__(self) -> None:
|
||||
pass
|
||||
|
||||
def run_repro(self, name: str, *args, **kwargs) -> None:
|
||||
pass
|
||||
def run_repro(
|
||||
self, nix_file: nix.File, name: str, file: pathlib.Path, *args, **kwargs
|
||||
) -> None:
|
||||
spec = importlib.util.spec_from_file_location("rep", file)
|
||||
if not spec:
|
||||
log.error("Could not load the file")
|
||||
else:
|
||||
module = importlib.util.module_from_spec(spec)
|
||||
if not module:
|
||||
log.error("Could not load the module of the repro")
|
||||
else:
|
||||
sys.modules[name] = module
|
||||
spec.loader.exec_module(module)
|
||||
if hasattr(module, name):
|
||||
rep_class = getattr(module, name)
|
||||
rep_class.run(nix_file)
|
||||
else:
|
||||
raise AttributeError(f"{file.name} has no {name} class")
|
||||
|
||||
def names_of_repros(self):
|
||||
file_path_cur = pathlib.Path(__file__).parent
|
||||
|
||||
Loading…
Reference in New Issue
Block a user