import nixio as nix
import os
from IPython import embed

def read_baseline_eod(dataset):
    base = dataset.split(os.path.sep)[-1] + ".nix"
    nix_file = nix.File.open(os.path.join(dataset, base))
    embed()
    nix_file.close()
    b = nix_file.blocks[0]
    for t in b.tags():
        if "baseline" in t.name:
            break;
    eod_da = b.data_arrays["LocalEOD-1"]
    eod = t.retrieve_data("LocalEOD-1")
    time = eod_da.dimensions[0].axis(len(eod))
    nix_file.close()

    
if __name__ == "__main__":
    data_dir = "../data"
    dataset = "2018-11-09-ad-invivo-1"
    eod = read_baseline_eod(os.path.join(data_dir, dataset))